BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3844.p
         (586 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981917|ref|YP_001352309.1| hypothetical protein mma_0619 [...   100   3e-22

>gi|152981917|ref|YP_001352309.1| hypothetical protein mma_0619
           [Janthinobacterium sp. Marseille]
          Length = 578

 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 164/605 (27%), Positives = 256/605 (42%), Gaps = 84/605 (13%)

Query: 22  PASAATRRALPERAAWLLLVLAGAAWLLPGIVGHGPWKQDETYSFGMIHHMLVS--GQYL 79
           PASA    ALP  A + L +L    ++LPG+VG  PWK D+   FG++  M       +L
Sbjct: 7   PASATL--ALPRWALFALCLL----YILPGLVGRDPWKPDDAAGFGIMWTMATGSLADWL 60

Query: 80  VPTNAGQPFMEKPPLYYWTAVLFAKLLHPLLPYHDGARLASVFYNLVSLVFVARIAKLMW 139
            P   G    E+ PL +W   +  KL   LL     ARLA + + L+  V V     L+ 
Sbjct: 61  SPNIVGLAMPEEGPLAFWFGAICIKLFGWLLGAPMAARLAPICFFLLGSVAVWYTTYLLG 120

Query: 140 HQRTLMSLPVL----------------ATLALFAGSPGMVKHAHDMFTD---VALVTGGT 180
            +     L +                   L ++ G  G++ H+H   ++   V+LV    
Sbjct: 121 RRAEAQPLKLAFGGQPEPKDFGRTLADGALLIYLGCLGLLVHSHGTTSEALQVSLVACSL 180

Query: 181 MATYGLLALALNEERRTPAWAAAVWFGLGVGITMMAKGLFVPLTFAATAMAVSAMVPACR 240
            AT  L     +  RRT      V  GL +G   + +G   P   AA  + + A++ A R
Sbjct: 181 YATTRLFEA--HTLRRT------VVLGLALGALALTRGWVTP---AALLIGI-AVLAAIR 228

Query: 241 ARSYWKMIGAAVLVSLPFFVI------WPTLLAQHSMPLFMEWFWDNNVGRFFGFSVNKL 294
            R+   ++   V ++LP   I      W +   Q   P     F +N V  +  ++  ++
Sbjct: 229 DRA---LLPRLVFIALPLAAIICGAWMWAS---QQVQP-----FGNNPVDAWMAWNYRQV 277

Query: 295 GSDNDHTV--VLRALAGFALPGSLLALLALATGDWRQVRSA-RVALPLAFAAISLAVLQS 351
            + +  T+   L+    FA P    A+ A+    WR+  +A  + LPL F A  L +   
Sbjct: 278 SAPSISTLQYFLKNAIWFAWPAWPFAIWAVYA--WRRQHAALHITLPLTFFAALLVLALL 335

Query: 352 SATARQLYLLPVLLPLAMLGARALPRLPDGFHLAWDWLSRLGFGLLAIGIWATYFISTL- 410
           ++   +  LLP+L  LA+L A  LP +  G   A DW S +     A  IW  +      
Sbjct: 336 NSHGEEASLLPLLPMLAILAAFGLPTMKRGAINAVDWFSVMMLTTCAAFIWIGWIAKQTG 395

Query: 411 -PAEQHQAIAFMGKWLPLDFVTPIQPLALLAAGSMSILWIGSLGLLRLAGK-WRGAFSWF 468
            PA+  +    +      +F   +  +A  AA S   +WI    + R     WR      
Sbjct: 396 WPAQLARNAFKIAPGFKPEFNLFVMLIA--AAASAGWIWIVYWRVSRRPSVLWRAVVLSS 453

Query: 469 GGITLMWGLAFTLLLPWADYGKSYEYVYADLKAKIGPVWREGDCMASQGLGESEAPMLYY 528
           GGI L W L  TL LPW +Y KSY  V   + A +  V R   C+AS  +G ++     Y
Sbjct: 454 GGIILCWLLLMTLWLPWGNYIKSYVGVAQQIDAALPTVKR---CVASN-VGPAQRASFAY 509

Query: 529 YIGILHQPIDGHRKTQCRWVIQEMPGAHK---------RPHGHWILFWEGRRDGDDGQLF 579
           + G +     G +   C +++ +   AH+         R +  W L W GRR  D  + F
Sbjct: 510 F-GKIEFAQFGEKN--CDYLLLQ--DAHRGNDAAATVTRYNQQWQLVWHGRRPADRDERF 564

Query: 580 KIYQR 584
           ++Y+R
Sbjct: 565 RLYRR 569


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.326    0.139    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,338,682
Number of extensions: 56169
Number of successful extensions: 245
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 498
Effective length of database: 895,685
Effective search space: 446051130
Effective search space used: 446051130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)