BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3843.p
         (413 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982554|ref|YP_001355030.1| major facilitator superfamily m...   580   e-167

>gi|152982554|ref|YP_001355030.1| major facilitator superfamily
           multidrug-efflux transporter [Janthinobacterium sp.
           Marseille]
          Length = 409

 Score =  580 bits (1496), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 290/404 (71%), Positives = 344/404 (85%), Gaps = 3/404 (0%)

Query: 1   MSHHISSSALPEKTGMSRAEVRASASLASIFSLRMLGLFLVLPVFAVHAHSLPGGDSDTL 60
           MS+  S+      TGM+R E+RAS SLASIF+LRMLGLFL+LPVFAVHA +LPGG+S TL
Sbjct: 1   MSYDSSNDL---STGMTRTEIRASTSLASIFALRMLGLFLILPVFAVHAKTLPGGESATL 57

Query: 61  VGVALGIYGLAQACGQIPYGIASDRYGRKRIIVIGLLLFALGSFVAAGAHNVLWLLIGRA 120
           VG+A+GIYGL Q+ GQIP+GIASD+YGRKRIIVIGL+LFALGSF+AA A N++W++IGR+
Sbjct: 58  VGLAMGIYGLTQSFGQIPFGIASDKYGRKRIIVIGLILFALGSFIAAAADNIIWVIIGRS 117

Query: 121 LQGSGAISAAITAFIADSTREEHRTKAMAMVGASIGVTFAVSMVASPLLYKSIGMGGIFG 180
           +QG+GAISAA+TAFIADSTREEHRTKAMAMVG SIG+TFA S++ SPLLY+ IGMGGIF 
Sbjct: 118 VQGAGAISAAVTAFIADSTREEHRTKAMAMVGGSIGLTFAGSLILSPLLYQWIGMGGIFA 177

Query: 181 LTGVLSLIAIAVVLWVVPTAPMVQAKRVPLREVLRHAELLRLNFGVFTLHLTQVAMFMVV 240
           LTG+LS++AI VV++VVP AP +   +V +RE+L H EL+RLNFGVF LHLTQ+AMF+VV
Sbjct: 178 LTGILSVLAIFVVIYVVPAAPSLPPAQVSIREILAHGELMRLNFGVFALHLTQMAMFVVV 237

Query: 241 PAALVQMAGLPLGEHWKIYLPVVLASFVLMLPPIIVAEKYGRMKSVFVAAISLMLLVQLG 300
           P+AL++ A LPL EHWKIYLPVV+ASFVLMLPPI + EK G+ K VFVAAI+L+LLVQ+G
Sbjct: 238 PSALIRFAQLPLAEHWKIYLPVVIASFVLMLPPIFIGEKRGKSKQVFVAAIALLLLVQVG 297

Query: 301 FWAVLSHPLAHLWMLVGLLFLFFVAFNILEAAQPSLVSRIAPPAAKGAALGVYNTLQALG 360
            W VLS    H   LVGLL  FFVAFNILEA+QPSLVSRIAPP +KGAALGVYNTLQALG
Sbjct: 298 MWLVLSQTQVHWTWLVGLLLAFFVAFNILEASQPSLVSRIAPPGSKGAALGVYNTLQALG 357

Query: 361 LSCGGALGGWLKQHVNNSAVFLLCAVLTATWLIIAANMKNLPRR 404
           L CGGALGGWL QHV  ++VF+L + L   WLIIAANMKNLPRR
Sbjct: 358 LFCGGALGGWLTQHVGGASVFVLGSALCVVWLIIAANMKNLPRR 401


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.327    0.139    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 882,291
Number of extensions: 35602
Number of successful extensions: 239
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 5
Length of query: 413
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 327
Effective length of database: 903,079
Effective search space: 295306833
Effective search space used: 295306833
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)