BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3842.p
         (173 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980525|ref|YP_001355029.1| single-strand DNA-binding prote...   238   2e-64
gi|152982954|ref|YP_001353917.1| single-strand DNA-binding prote...    59   2e-10

>gi|152980525|ref|YP_001355029.1| single-strand DNA-binding protein
           [Janthinobacterium sp. Marseille]
          Length = 162

 Score =  238 bits (606), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 130/173 (75%), Positives = 140/173 (80%), Gaps = 11/173 (6%)

Query: 1   MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYR 60
           MASVNKVIIVGNLGRDPETRYMPNGEAVTN+AVATTESWKDKN+G+KKE+TEWHRITFYR
Sbjct: 1   MASVNKVIIVGNLGRDPETRYMPNGEAVTNVAVATTESWKDKNSGDKKEITEWHRITFYR 60

Query: 61  KLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQMLGGRQGAGGGGGM 120
           KLAEIAGQYLKKGS +YVEGRLQTRKW DK+GVERYTTEIIADTMQMLGGR GAGGG   
Sbjct: 61  KLAEIAGQYLKKGSAVYVEGRLQTRKWTDKDGVERYTTEIIADTMQMLGGRPGAGGGSAG 120

Query: 121 DEGSYGGGGGGSYGGGAPRQSAGGGAAGGGAPRQQPAQRPAPNFSDMDDDIPF 173
            +  YG          APRQS+GGG A   A     +     NF+DMDDDIPF
Sbjct: 121 MDDDYGS------SAPAPRQSSGGGNARPAAKPAAAS-----NFNDMDDDIPF 162


>gi|152982954|ref|YP_001353917.1| single-strand DNA-binding protein
           [Janthinobacterium sp. Marseille]
          Length = 125

 Score = 58.9 bits (141), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 6/109 (5%)

Query: 4   VNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYRKLA 63
           +NK+   G +  D E R+   G+ + +  +A+   + DK T      T W     + K  
Sbjct: 1   MNKIAATGRVVADAELRFTAAGDPIASFRLASDVGFGDKKT------TNWFACQIWGKRG 54

Query: 64  EIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQMLGGRQ 112
           E    +L KG Q+ V G+L  R+W +K+GV+  + +I  D +++ GG+Q
Sbjct: 55  EALAPHLTKGQQVTVFGQLTLREWTNKDGVKAISPDIRVDEIELQGGKQ 103


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.312    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 268,904
Number of extensions: 8603
Number of successful extensions: 26
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 2
Length of query: 173
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 96
Effective length of database: 936,352
Effective search space: 89889792
Effective search space used: 89889792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 126 (53.1 bits)