BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3840.p (495 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981372|ref|YP_001353395.1| hemolysin activation/secretion ... 57 2e-09 gi|152981377|ref|YP_001351699.1| hemolysin activation/secretion ... 57 3e-09 >gi|152981372|ref|YP_001353395.1| hemolysin activation/secretion protein [Janthinobacterium sp. Marseille] Length = 526 Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 104/232 (44%), Gaps = 18/232 (7%) Query: 30 QYLDQYAGQCVGKD-GLNLIVKRLTAL---ILSKGYSTTRLGIAAQDLSSHRLELTLVPG 85 Q +D+ +GKD ++K L AL ++GY R+ + Q+L+ + L +V Sbjct: 48 QTVDRLVAPYLGKDRDFADVMKALEALEAAYHARGYQLVRIDLPEQELNQGTVVLNVVQA 107 Query: 86 MI--RAIKFSSDAAGTTWKSAFPT-GPGQLLNLRDLEQGLEQMKRVPTQDVTMEIVPGEL 142 I I+ +S + + P GQ +L+ + + L+ P + VTM + E Sbjct: 108 KIGNVVIEGNSHFDDANIRRSLPALQEGQTPDLKAVSKSLKLANENPAKKVTMRMKSAEQ 167 Query: 143 PGESDVVITVKRKTPWKLTAALDDSGAKGTGKLQSSVNLAWDNLFGLNDLFNIGLNTDAD 202 E + + V ++ W+ T D++G TG+ ++ V L N+FGL+ + ++ T + Sbjct: 168 DDEVEATLAVVDESVWRTTINFDNTGVASTGRTRAGVVLQNANMFGLDHVMSLQYTTTLE 227 Query: 203 RRGQQRGTHGSNIYYSIPYGYWTFSAAASTYAYHQQI------AGLFQTFVS 248 + G +G + Y IP + + YA + + AG+F VS Sbjct: 228 EP-SRVGVYG--VGYHIP--LYALGDSMDFYASYSDVDAGTVTAGIFDIAVS 274 >gi|152981377|ref|YP_001351699.1| hemolysin activation/secretion protein [Janthinobacterium sp. Marseille] Length = 526 Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 103/232 (44%), Gaps = 18/232 (7%) Query: 30 QYLDQYAGQCVGKD-GLNLIVKRLTAL---ILSKGYSTTRLGIAAQDLSSHRLELTLVPG 85 Q +D +GKD ++K L AL ++GY R+ + Q+L+ + L +V Sbjct: 48 QTVDSLVAPYLGKDRDFADVMKALEALEAAYHARGYQLVRIDLPEQELNQGTVVLNVVQA 107 Query: 86 MI--RAIKFSSDAAGTTWKSAFPT-GPGQLLNLRDLEQGLEQMKRVPTQDVTMEIVPGEL 142 I I+ +S + + P GQ +L+ + + L+ P + VTM + E Sbjct: 108 KIGNVVIEGNSHFDDANIRRSLPALQEGQTPDLKAVSKSLKLANENPAKKVTMRMKSAEQ 167 Query: 143 PGESDVVITVKRKTPWKLTAALDDSGAKGTGKLQSSVNLAWDNLFGLNDLFNIGLNTDAD 202 E + + V ++ W+ T D++G TG+ ++ V L N+FGL+ + ++ T + Sbjct: 168 DDEVEATLAVVDESVWRTTINFDNTGVASTGRTRAGVVLQNANMFGLDHVMSLQYTTTLE 227 Query: 203 RRGQQRGTHGSNIYYSIPYGYWTFSAAASTYAYHQQI------AGLFQTFVS 248 + G +G + Y IP + + YA + + AG+F VS Sbjct: 228 EP-SRVGVYG--VGYHIP--LYALGDSMDFYASYSDVDAGTVTAGIFDIAVS 274 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.134 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,142,826 Number of extensions: 49666 Number of successful extensions: 161 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 160 Number of HSP's successfully gapped: 3 Length of query: 495 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 408 Effective length of database: 899,382 Effective search space: 366947856 Effective search space used: 366947856 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)