BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3837.p (382 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981352|ref|YP_001354956.1| ABC-type branched-chain amino a... 105 6e-24 gi|152981349|ref|YP_001352355.1| ABC-type branched-chain amino a... 94 1e-20 gi|152981482|ref|YP_001352346.1| ABC-type branched-chain amino a... 62 5e-11 gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino a... 57 2e-09 >gi|152981352|ref|YP_001354956.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 376 Score = 105 bits (261), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 86/375 (22%), Positives = 166/375 (44%), Gaps = 20/375 (5%) Query: 9 ALFIAIWLPCTMTPARSEQLRYVTLGLSAWLTQPIV---QSAWHGAEMAVDDANALAAKK 65 + I + T ++++++ V +GL+A LT P + + +GA +AVD+ N +K Sbjct: 5 SFIFPILIASASTLVQAQEVQTVKIGLAAPLTGPQAFYGKDSQNGARLAVDELN----EK 60 Query: 66 K-----SSYRFRLLAQDDQGTANFGVNVAHYFIKEKVAGILGPWSSDAAMATAELYEAAH 120 K RF LL++DD G VA F V ++G +S A+ A +Y Sbjct: 61 KIVVGGKQLRFELLSEDDAADPKQGAAVAQRFCDLHVNAVIGHTNSGTAIPAARIYHQCG 120 Query: 121 IPQIGFTASTSQWTNQGHRMPFRVVGSTSELSAALAEVVKRPLAGKRVFVIHNDTVFSNA 180 +P + +A++ + T + FR++ + S L+ ALA L K + V+ + + + Sbjct: 121 LPNLSPSATSPELTKSAYNTTFRMLANDSTLAQALAAYTVNVLKLKTIAVVDDRSAYGQG 180 Query: 181 VSDELISRLGKQAGTTTMRYLVGRRSTDFNAAIKAASQYQADVVVFLALFPQAAAFLDEA 240 ++D + L + ++ DF+A + A D V F + PQ +A L + Sbjct: 181 LADAFRTALRNTPVQVVTQQYTNDKAVDFSAILTAIKGRNPDAVFFGGMDPQGSAMLRQM 240 Query: 241 RRARLEARLLLLGGATRLSLGEVDLPQAYALEYEVPHTHCP---RWKSFTQAYTKRFNEP 297 + L R +GG + G + ++ + H + ++A+ KR++E Sbjct: 241 EQLGL-TRQKFIGGDGICTQGMEQRTEGMKIQDNLVCAHSGIALDRTTASRAWKKRYDEK 299 Query: 298 -PSTYSY---YAYDAASVLIAAILQSDSTDGQRIAATLRTMHHAGLNGTISFAPNGAHAQ 353 P + Y+YDA + A+ ++S + Q+ + +H AG+ + F G Sbjct: 300 FPGQFQMHGPYSYDAVLAVAKAMQAANSVEPQKYLPAMGKVHFAGVMSNVQFDARGEIKN 359 Query: 354 PRFTLYQHQRQWRQV 368 P ++Y +Q R++ Sbjct: 360 PTISIYTYQDGKRRL 374 >gi|152981349|ref|YP_001352355.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 381 Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 84/330 (25%), Positives = 145/330 (43%), Gaps = 17/330 (5%) Query: 49 HGAEMAVDDANA----LAAKKKSSYRFRLLAQDDQGTANFGVNVAHYFIKEKVAGILGPW 104 +GA +AV++ NA + KK + + + +DD A + VA ++G Sbjct: 50 NGARLAVEELNAKGVVINGKK---VKLQYMPEDDAADPKQATAAATKLVDSNVAVVIGHL 106 Query: 105 SSDAAMATAELYEAAHIPQIGFTASTSQWTNQGHRMPFRVVGSTSELSAALAEVVKRPLA 164 +S A + + +Y A I QI ++++ ++T QG + FRVV + ++L L + + LA Sbjct: 107 NSGATIPASRIYANAGIVQISPSSTSPKYTQQGFKTAFRVVANDAQLGRVLGQYAVKSLA 166 Query: 165 GKRVFVIHNDTVFSNAVSDELISRLGKQAGTTTMRYLVGRRSTDFNAAIKAASQYQADVV 224 K V VI + T + V++E + GT ++TDFNA + A + DV+ Sbjct: 167 AKNVAVIDDRTAYGQGVAEEFAKGVKAAGGTVVASQYTNNKATDFNAILTAIKAKKPDVI 226 Query: 225 VFLALFPQAAAFLDEARRARLEARLL--------LLGGATRLSLGEVDLPQAYALEYEVP 276 F + L + ++ + A+ + L G LGE ++ A A E Sbjct: 227 FFGGMDAVGGPMLQQMKQLGINAKFMGGDGICTGSLPGLAGAGLGENNVYCAEAGGVE-- 284 Query: 277 HTHCPRWKSFTQAYTKRFNEPPSTYSYYAYDAASVLIAAILQSDSTDGQRIAATLRTMHH 336 F AY KRF + YAYDA ++ A+ ++ S + + L + + Sbjct: 285 DARKAGLDKFRAAYKKRFGIDVIYTAAYAYDATYAVVDAMQKAKSWESAKYLPELTKISY 344 Query: 337 AGLNGTISFAPNGAHAQPRFTLYQHQRQWR 366 G+ GTI+F G TLY ++ R Sbjct: 345 PGVTGTIAFDAKGDIKDGTLTLYTYRGGKR 374 >gi|152981482|ref|YP_001352346.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 391 Score = 62.0 bits (149), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 77/320 (24%), Positives = 134/320 (41%), Gaps = 15/320 (4%) Query: 49 HGAEMAVDDANALAAKKKSSYRFRLLAQDDQGTANFGVNVAHYFIKEK--VAGILGPWSS 106 + A++AV NA K+ Y ++L+ QDD+ N GV VA +K VAG+ + S Sbjct: 53 NSADLAVRLRNA---DPKAKYTYQLVTQDDECRPNVGVQVATKIAADKSIVAGVT-HFCS 108 Query: 107 DAAMATAELYEAAHIPQIGFTASTSQWT-NQGHRMPFRVVGSTSELSAALAEVVKRPLAG 165 AM T +Y +P I + A + T + RV G+ S A+ + Sbjct: 109 AVAMGTVGVYNRFGLPVIVWGAVLPEITYGNDFKEVHRVNGTMINQSEVAAKFMISK-GY 167 Query: 166 KRVFVIHNDTVFSNAVSDELISRLGKQAGTTTMRYLVGRRSTDFNAAIKAASQYQADVVV 225 K+ +IH+ T + + + K GT + V DF + + + DVV Sbjct: 168 KKWAIIHDTTDYGKGHNKYFSEFVKKNGGTVLSTFGVTADQQDFTTELTKIRELKPDVVY 227 Query: 226 FLALFPQAAAFLDEARRARLEARLLLLGG----ATRLSLGEVDLPQAYALEYEVPHTHCP 281 F L P + + ++A+ G A +GE + + P P Sbjct: 228 FGGLTPLGVRIRTQMEKLGIKAQFEGTSGIKSDAYIQGVGEKVAEGSLSFIEGAPWEKIP 287 Query: 282 RWKSFTQAYT-KRFNEPPSTYSYYAYDAASVLIAAILQSDSTDGQRIAATL-RTMHHAGL 339 FT Y ++++EPP Y +A+ AA++++ A+ + D +++ L +T L Sbjct: 288 GGLFFTAKYQLQKYSEPPEAYGPFAFAAANLIMDAV-EKVGPDRKKVRDVLNQTKDVDTL 346 Query: 340 NGTISFAPNGAHAQPRFTLY 359 G ++F + + P T Y Sbjct: 347 IGKVTFDDHRQNIVPLVTKY 366 >gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 385 Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 82/344 (23%), Positives = 142/344 (41%), Gaps = 30/344 (8%) Query: 31 VTLGLSAWLTQPIVQSAWH---GAEMAVDDAN---ALAAKKKSSYRFRLLAQDDQGTANF 84 + +G++ LT P+ + + GA +A D N + KK +L+ +D++ Sbjct: 29 IKIGVTEPLTGPVAAAGTYVTNGARIAADYVNQNGGVLGKK-----IQLVIEDNKSNPRE 83 Query: 85 GVN-VAHYFIKEKVAGILGPWSSDAAMATAELYEAAHIPQIGFTASTSQWTNQGHRMPFR 143 VN V +K+KV ++G WSS +A +P + AS+S+ T G+ FR Sbjct: 84 AVNSVEKLILKDKVPVLMGAWSSTFTLAIMPKLIEYEVPLVVEAASSSKITTAGNPWVFR 143 Query: 144 VVGSTSELSAALAEVVK--RPLAGKRVF-VIHNDTVFSNAVS-DELISRLGKQAG-TTTM 198 +++ + A ++V+ P K F V++ND AV +++ G G T TM Sbjct: 144 TSPTSAMEAQAFSKVIDGYNPAIKKADFLVVNNDWGLGAAVEFKKMLEAKGIAIGRTETM 203 Query: 199 RYLVGRRSTDFNAAIKAASQYQADVVVFLALFPQAAAFLDEARRARLEARLLLLGGATRL 258 TD +A + A +D V + Q + +A RL R++ GGA Sbjct: 204 T----PDMTDLSAQLAALKGSGSDTVFVTSGIEQLTLAIRQAGEQRLPQRIITTGGAFPE 259 Query: 259 SLGEVDLPQAYALEYEV------PH--THCPRWKSFTQAYTKRFNE-PPSTYSYYAYDAA 309 L + P+ Y ++ + P H K+F + R E + +DA Sbjct: 260 PLLKTPGPKGYVSQHLLFFAPWAPERAKHPAVAKAFMDGWKSRGLELAGQVEGFRGFDAI 319 Query: 310 SVLIAAILQSDSTDGQRIAATLRTMHHAGLNGTISFAPNGAHAQ 353 + AI + + I L + G NG I+F+ G + Sbjct: 320 LTIAEAIKLAGKAEPAAIRDALWKVQVKGTNGDIAFSKVGVAGK 363 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.131 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 760,354 Number of extensions: 26666 Number of successful extensions: 99 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 97 Number of HSP's successfully gapped: 4 Length of query: 382 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 297 Effective length of database: 906,776 Effective search space: 269312472 Effective search space used: 269312472 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)