BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3836.p (568 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 385 e-108 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 375 e-105 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 373 e-104 gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis pro... 367 e-102 gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (... 364 e-102 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 385 bits (989), Expect = e-108, Method: Compositional matrix adjust. Identities = 223/346 (64%), Positives = 267/346 (77%), Gaps = 10/346 (2%) Query: 215 LDARTSAQVEKARAHSANMALLFHALIGMALVVLACTLMVVYK---AIRDPLAHAAGVAR 271 +DA T AQ+ A S +L A+ VLA + ++ I PL A AR Sbjct: 175 MDAGT-AQLSDVEAASTRQLMLLSAM------VLAFGIFCAWRLTIGITRPLKTAVDAAR 227 Query: 272 RVAQGDLTAEINTNIKGETGELLEALRTMQAGLQTIVTDVREGAHRIDNSATEIAAGTLD 331 RVA GDLT +I K E G+LL AL+ M GLQ IV +VR G I ++ EIAAG LD Sbjct: 228 RVAGGDLTNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLD 287 Query: 332 LSNRTEQQAGSLEETASSMEEITSTVKQNAGNARLASELASAASAVALKGGAVVSQVVET 391 LS+RTEQQA SLEETASSMEE+TSTVKQNA NAR A++LA +AS VALKGG VVSQVV+T Sbjct: 288 LSSRTEQQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQT 347 Query: 392 MGAINASSKKVVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRS 451 M +IN SS+K+VDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRS Sbjct: 348 MSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRS 407 Query: 452 AAAAKEIKELIDNSVTKVDAGSLLVNQAGSTMQEVVSSVQRVTEIVADISSASQEQSAGV 511 A+AAKEIK LI +SV KVD G+ LV +AG+TM E+V+S++RVT+I+ +I++ASQEQSAG+ Sbjct: 408 ASAAKEIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGI 467 Query: 512 EQVQQAISQMDNVTQQNAALVEQASAAAESMQGQAHKLSELVGAFK 557 EQ+ QAI QMD+VTQQNA+LVE+A+AAAESMQ QA KL ++VGAFK Sbjct: 468 EQINQAIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFK 513 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 375 bits (963), Expect = e-105, Method: Compositional matrix adjust. Identities = 237/429 (55%), Positives = 304/429 (70%), Gaps = 11/429 (2%) Query: 145 LSEAKANSDALVKTETVAMNMVKGLYEDAQGNFTRRGEPDMAKARELMHDHAYHVNKAKI 204 ++EA D +K+E +K L DA+G FT + +A + M A + A++ Sbjct: 93 IAEALDKLDRTIKSEK-GRTYIKALT-DARGRFTPVKDKFVALVAQGMRAEAQILLFAEV 150 Query: 205 MRPVD-QFFAMLDARTSAQV-------EKARAHSANMALLFHALIGMALVVLACTLMVVY 256 RP ++ LD Q E A SAN L L +A+++ A + Sbjct: 151 -RPAQLEYMLGLDRLVEFQSNLMHKAGEDAHEVSANAQQLVGILSVIAVIISAFLGFLAT 209 Query: 257 KAIRDPLAHAAGVARRVAQGDLTAEINTNIKGETGELLEALRTMQAGLQTIVTDVREGAH 316 ++I PL+ A G+AR+VA GDLT I K ETG+LL+AL+ M GL IVT VR G Sbjct: 210 RSITRPLSQAVGLARKVADGDLTGTIVVTSKDETGQLLQALQDMNNGLVRIVTQVRMGTD 269 Query: 317 RIDNSATEIAAGTLDLSNRTEQQAGSLEETASSMEEITSTVKQNAGNARLASELASAASA 376 I ++++IA G LDLS+RTE+QA SLEETASSMEE+TSTVKQNA NAR +++LA AS Sbjct: 270 TIATASSQIATGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQSNQLALTASE 329 Query: 377 VALKGGAVVSQVVETMGAINASSKKVVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRG 436 VA++GGAVVSQVVETMG+IN S+ K+VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRG Sbjct: 330 VAVRGGAVVSQVVETMGSINDSANKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRG 389 Query: 437 FAVVATEVRSLAQRSAAAAKEIKELIDNSVTKVDAGSLLVNQAGSTMQEVVSSVQRVTEI 496 FAVVA+EVR+LAQRSA+AAKEIK LID+SV KV+ GS LV+ AG+TM EVV SV+RVT+I Sbjct: 390 FAVVASEVRNLAQRSASAAKEIKTLIDDSVEKVNNGSRLVHDAGTTMAEVVESVRRVTDI 449 Query: 497 VADISSASQEQSAGVEQVQQAISQMDNVTQQNAALVEQASAAAESMQGQAHKLSELVGAF 556 + +I++ASQEQ+ G+EQ+ QA+ QMD VTQQNAALVE+A+AAAES+Q QA+ LS++V F Sbjct: 450 MGEITAASQEQTDGIEQINQAVMQMDQVTQQNAALVEEAAAAAESLQDQANNLSQVVSVF 509 Query: 557 KTKAGSPSL 565 K A + +L Sbjct: 510 KLDANAVAL 518 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 373 bits (958), Expect = e-104, Method: Compositional matrix adjust. Identities = 213/342 (62%), Positives = 271/342 (79%) Query: 225 KARAHSANMALLFHALIGMALVVLACTLMVVYKAIRDPLAHAAGVARRVAQGDLTAEINT 284 +A A ++ LL +A+++ A ++ ++I PL+ A +AR+VA GDLT I Sbjct: 178 EANAKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVV 237 Query: 285 NIKGETGELLEALRTMQAGLQTIVTDVREGAHRIDNSATEIAAGTLDLSNRTEQQAGSLE 344 K ETG+LL+AL+ M GL IVT VR G I +++ +IA G LDLS+RTEQQA SLE Sbjct: 238 ESKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLE 297 Query: 345 ETASSMEEITSTVKQNAGNARLASELASAASAVALKGGAVVSQVVETMGAINASSKKVVD 404 ETASSMEE+TSTVKQNA NAR +++LA +AS VA++GGAVVS+VV+TMG IN S+KK+VD Sbjct: 298 ETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVD 357 Query: 405 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKELIDN 464 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIKELI + Sbjct: 358 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGD 417 Query: 465 SVTKVDAGSLLVNQAGSTMQEVVSSVQRVTEIVADISSASQEQSAGVEQVQQAISQMDNV 524 SV KV GS LV+ AG+TM+EVV SV+RVT+I+++I++ASQEQ+ G+EQ+ QA+ QMD V Sbjct: 418 SVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQV 477 Query: 525 TQQNAALVEQASAAAESMQGQAHKLSELVGAFKTKAGSPSLV 566 TQQNAALVE+A+AAAES+QGQA LS++VG FK ++V Sbjct: 478 TQQNAALVEEAAAAAESLQGQASHLSQVVGVFKLDGHGTTVV 519 >gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 549 Score = 367 bits (941), Expect = e-102, Method: Compositional matrix adjust. Identities = 209/337 (62%), Positives = 263/337 (78%), Gaps = 1/337 (0%) Query: 228 AHSANMALLFHALIGMALVVLACTLMVVYKAIRDPLAHAAGVARRVAQGDLTAEINTNIK 287 AH ++ L+ + + L+ AC + V+ ++I PL A VA R A GDLT +I K Sbjct: 185 AHQRSLNLMIGLGVLLILLGAACAI-VITRSITKPLRSAIDVASRAADGDLTGDIGKPSK 243 Query: 288 GETGELLEALRTMQAGLQTIVTDVREGAHRIDNSATEIAAGTLDLSNRTEQQAGSLEETA 347 E G+L+ AL M GL+ IV DV+ G I+ ++ EIA G LDLS+RTEQQA SLEETA Sbjct: 244 DEIGDLMRALGGMNDGLKKIVNDVKAGTDFINTASAEIAHGNLDLSSRTEQQAASLEETA 303 Query: 348 SSMEEITSTVKQNAGNARLASELASAASAVALKGGAVVSQVVETMGAINASSKKVVDIIG 407 SSMEE+TSTVKQNA NA+ A++LA +AS VA KGGAVV +++ TMGAIN+SS+K+VDIIG Sbjct: 304 SSMEELTSTVKQNAENAQQANQLAVSASDVAAKGGAVVKEMISTMGAINSSSRKIVDIIG 363 Query: 408 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKELIDNSVT 467 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIK LI +SV+ Sbjct: 364 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKSLIGDSVS 423 Query: 468 KVDAGSLLVNQAGSTMQEVVSSVQRVTEIVADISSASQEQSAGVEQVQQAISQMDNVTQQ 527 VDAGS LV++AG TM +VV+S++ VT+I+ +I +ASQEQS+G+EQV AISQMD VTQQ Sbjct: 424 NVDAGSKLVSEAGKTMDDVVNSIRHVTDIMNEIMAASQEQSSGIEQVNTAISQMDQVTQQ 483 Query: 528 NAALVEQASAAAESMQGQAHKLSELVGAFKTKAGSPS 564 NAALVE+A+AA++S++ QA KL+++V FK P+ Sbjct: 484 NAALVEEAAAASQSLRDQADKLAQIVNVFKLDERQPA 520 >gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] Length = 560 Score = 364 bits (935), Expect = e-102, Method: Compositional matrix adjust. Identities = 206/311 (66%), Positives = 252/311 (81%) Query: 253 MVVYKAIRDPLAHAAGVARRVAQGDLTAEINTNIKGETGELLEALRTMQAGLQTIVTDVR 312 +V+ ++I PL A VA+ VA GDLT++IN K ETG+LL+AL+ M L IV +VR Sbjct: 204 IVISRSITRPLNEAVLVAQTVASGDLTSQINVKSKDETGQLLQALKDMNQSLIGIVDEVR 263 Query: 313 EGAHRIDNSATEIAAGTLDLSNRTEQQAGSLEETASSMEEITSTVKQNAGNARLASELAS 372 G + ++ +IA+G +DLS+RTE+QA SLEETASSMEE+TSTVKQNA NAR A+ L+ Sbjct: 264 SGTATMATASNQIASGNMDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANSLSL 323 Query: 373 AASAVALKGGAVVSQVVETMGAINASSKKVVDIIGVIDGIAFQTNILALNAAVEAARAGE 432 +AS +A+KGG VVS+VV TM IN S+KK+ DIIGVIDGIAFQTNILALNAAVEAARAGE Sbjct: 324 SASEIAVKGGQVVSEVVVTMNGINDSAKKITDIIGVIDGIAFQTNILALNAAVEAARAGE 383 Query: 433 QGRGFAVVATEVRSLAQRSAAAAKEIKELIDNSVTKVDAGSLLVNQAGSTMQEVVSSVQR 492 QGRGFAVVA+EVR+LAQRSAAAAKEIK LID+SV +VD GS LV QAGSTM EVV SV+R Sbjct: 384 QGRGFAVVASEVRNLAQRSAAAAKEIKALIDDSVGRVDTGSKLVVQAGSTMTEVVDSVKR 443 Query: 493 VTEIVADISSASQEQSAGVEQVQQAISQMDNVTQQNAALVEQASAAAESMQGQAHKLSEL 552 VT+I+A+I +ASQEQSAG+EQV QAI+QMD+VTQQNAALVE+A+AAA S++ QA KL + Sbjct: 444 VTDIMAEIMAASQEQSAGIEQVNQAIAQMDHVTQQNAALVEEAAAAAGSLKDQAVKLEQT 503 Query: 553 VGAFKTKAGSP 563 V FK A +P Sbjct: 504 VSVFKIDASAP 514 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.314 0.126 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 919,221 Number of extensions: 31479 Number of successful extensions: 255 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 194 Number of HSP's successfully gapped: 21 Length of query: 568 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 480 Effective length of database: 895,685 Effective search space: 429928800 Effective search space used: 429928800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)