BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3835.p (362 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981014|ref|YP_001353510.1| two-component regulatory protei... 100 2e-22 gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing... 91 8e-20 gi|152980826|ref|YP_001354043.1| heavy metal sensor kinase [Jant... 86 4e-18 gi|152983085|ref|YP_001353411.1| sensor kinase of copper sensing... 85 7e-18 gi|152982315|ref|YP_001354919.1| two component sensor histidine ... 84 1e-17 >gi|152981014|ref|YP_001353510.1| two-component regulatory protein sensor kinase for high-affinity potassium transport system [Janthinobacterium sp. Marseille] Length = 908 Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 113/225 (50%), Gaps = 14/225 (6%) Query: 146 RNFWNAAIAHELRTPVTILRGRLQGLSDGVFQPDPALFAS-------LLVQVEGLGRLIE 198 RN AAI+H+LRTP+T L GLS+ + + P L A+ L + +G L+ Sbjct: 671 RNSLLAAISHDLRTPLTAL----VGLSESLTRSKPELAAAQQELAHALHEEALRMGNLVT 726 Query: 199 DLRIVGLAESGHLRVQLQQTDLQQEIVTVLKACESALQDKGFAIALALRLQRTVCDPVRI 258 +L + +SG +++ LQ ++ + + L+A +S L LA L D V I Sbjct: 727 NLLDMARIQSGEVKLNLQWQQFEEVVGSSLRAVQSLLGRHQVHTRLAPGLPLVNFDAVLI 786 Query: 259 RQALLALLENALQHATPGALRISTGSVDGQHY-LRVEDSGPGLAATDAQMIFDAFQRGPR 317 + L LLENA ++ G+ + GQ+ + V D+GPGL + IF+ F RG R Sbjct: 787 ERVLCNLLENASKYTPAGSQITIAAELSGQYLDVAVYDNGPGLPPGQEEAIFEKFTRGER 846 Query: 318 AASAPHKGSGLGLAVVRAIASAHHGTVDCQPSALGGTCFQLRWPV 362 ++ P G GLGLA+ RAI AHHGT+ S GG P+ Sbjct: 847 ESATP--GVGLGLAICRAIIEAHHGTIRGGHSPQGGAAIIFTLPL 889 >gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing two-component system [Janthinobacterium sp. Marseille] Length = 480 Score = 91.3 bits (225), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 80/284 (28%), Positives = 132/284 (46%), Gaps = 14/284 (4%) Query: 67 WSWILVTTLIGVAIAVWVAMRLSRRILTPLNSVATSLRRVAQGDLTARAAAERQPLDEAS 126 W L+ ++I + +A W A++ R P+ V+ +R + L R P+ E + Sbjct: 184 WWATLIVSVIALIVA-WCAVQWGHR---PIRKVSRDIRAIRSSRLDVRLDPTEVPI-ELA 238 Query: 127 QLISDFNAMAERLERVQQERNFWNAAIAHELRTPVTILRGRL-----QGLSDGVFQPDPA 181 +L + FN M R+E + ++A IAHELRTPVT L + Q S ++ Sbjct: 239 ELAASFNDMLGRIEDGFAKLANFSADIAHELRTPVTNLVMQTEVALSQSRSSAEYRE--- 295 Query: 182 LFASLLVQVEGLGRLIEDLRIVGLAESGHLRVQLQQTDLQQEIVTVLKACESALQDKGFA 241 + S L + E + R+I D+ + E+ + L + I + E+ ++ Sbjct: 296 ILYSNLEEFERMSRMISDMLFLAQTENDPHNLHLSDISIAAMIQDLFDYFEALAEEANIT 355 Query: 242 IALALRLQRTVCDPVRIRQALLALLENALQHATPGALRISTGSVDGQ-HYLRVEDSGPGL 300 + L D + +AL L+ NA+Q++ PG+ I S D Q + VE+ + Sbjct: 356 LTLEGNAAPVKADREMMLRALSNLISNAIQYSAPGSTVIVHLSQDKQVTTVSVENPAGQI 415 Query: 301 AATDAQMIFDAFQRGPRAASAPHKGSGLGLAVVRAIASAHHGTV 344 A D +FD F R + G+GLGLA+V++IA AH GTV Sbjct: 416 AREDLPKLFDRFFRTDPSRKRKASGAGLGLAIVKSIAEAHGGTV 459 >gi|152980826|ref|YP_001354043.1| heavy metal sensor kinase [Janthinobacterium sp. Marseille] Length = 466 Score = 85.9 bits (211), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 81/294 (27%), Positives = 133/294 (45%), Gaps = 13/294 (4%) Query: 75 LIGVAIAVWVAMRLSRRILTPLNSVATSLRRVAQGDLTARAAAERQPLDEASQLISDFNA 134 L G +A + L RR L P+ +A + L R P E +L+ FNA Sbjct: 177 LCGTLLAALLGYILVRRGLRPVRLIAGQASSITAHRLDTRLDLSSAP-QELHELVQAFNA 235 Query: 135 MAERLERVQQERNFWNAAIAHELRTPVTILRGR-----LQGLSDGVFQPDPALFASLLVQ 189 M +RL+ Q + ++A +AH+LRTP+ L + +Q S +Q L S + + Sbjct: 236 MLDRLDGSFQRLSQFSADLAHDLRTPLNNLMVQTQVALVQARSVEDYQ---GLLISNVEE 292 Query: 190 VEGLGRLIEDLRIVGLAESGHLRVQLQQTDLQQEIVTVLKACESALQDKGFAIALALRLQ 249 E L R++E + + E H+ + L +E+ + E + G + + Sbjct: 293 YERLTRMVESMLFLARVEHTHVMLNKSALSLPEELQRIADYFEGLADEAGVRLTVEAG-G 351 Query: 250 RTVCDPVRIRQALLALLENALQHATPGALRISTG--SVDGQHYLRVEDSGPGLAATDAQM 307 R D + +R+A+ L+ NA+ + GA + G + DG + V + G G+AA Sbjct: 352 RVYADAILLRRAIGNLVANAIPYTPRGATIVLKGVMTADGA-TVSVVNPGAGIAAQHIPH 410 Query: 308 IFDAFQRGPRAASAPHKGSGLGLAVVRAIASAHHGTVDCQPSALGGTCFQLRWP 361 +F+ F RG A S +GLGLA+V++I + H G G T F L +P Sbjct: 411 VFNRFYRGDAARSNSATSTGLGLAIVQSIMALHGGRATVTSEENGLTEFSLIFP 464 >gi|152983085|ref|YP_001353411.1| sensor kinase of copper sensing two-component system [Janthinobacterium sp. Marseille] Length = 458 Score = 84.7 bits (208), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 84/308 (27%), Positives = 145/308 (47%), Gaps = 33/308 (10%) Query: 69 WILVTTLIGVAIAVWVAMRLSRRILTPLNSVATSLRRVAQGDLTARAAAERQPLD----E 124 +ILV + + + W A R+ L+PL ++A + V T++ ER P+D E Sbjct: 164 YILVAAMATIMLGWWAA----RQGLSPLRTMAARAQAV-----TSQNMKERMPVDAVPTE 214 Query: 125 ASQLISDFNAMAERLERVQQERNFWNAAIAHELRTPVTILRGRL-----QGLSDGVFQPD 179 + L NAM +RL+ ++A +AHELRTP++ + + Q S ++ Sbjct: 215 MTDLAVKLNAMLDRLQNDIARLTEFSADLAHELRTPISNMLTQTHVVLNQSRSAADYRDS 274 Query: 180 PALFASLLVQVEGLGRLIEDLRIVGLAESGHLRVQLQQTDLQQEIVTVLKACESALQDKG 239 +S +++ LG+ I D+ + E+G +++ ++ QE +L+ E+ ++K Sbjct: 275 ---LSSNAEELQRLGKTISDMLFLAQTENGLALPSVEKLNMAQECQALLEFYEALAEEK- 330 Query: 240 FAIALALRLQ---RTVCDPVRIRQALLALLENALQHATP--GALRISTGSVDGQHYLRVE 294 + LR + + D + R+AL LL NAL++ TP G + I + + VE Sbjct: 331 ---EVTLRCEGDAVVIGDRLMFRRALNNLLSNALRY-TPSHGTISIKIKAAQAGTVVTVE 386 Query: 295 DSGPGLAATDAQMIFDAFQRGPRAASAPHKGS-GLGLAVVRAIASAHHGTVDCQPSALGG 353 + G + +FD F R ++ S GLGL++ RAI AH G+V S Sbjct: 387 NDGKEIPIEIQPHLFDRFYRADKSRKKSESDSAGLGLSITRAIMQAHGGSVSV-VSGESK 445 Query: 354 TCFQLRWP 361 T F L +P Sbjct: 446 TAFSLYFP 453 >gi|152982315|ref|YP_001354919.1| two component sensor histidine kinase protein [Janthinobacterium sp. Marseille] Length = 427 Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 86/316 (27%), Positives = 148/316 (46%), Gaps = 22/316 (6%) Query: 53 AMSAPDS-WL----PSPVEWSWILVTTLIGVAIAVWV-AMRLSRRILTPLNSVATSLRRV 106 A+ PD WL P + + TTL+ + +A+ + A + RR+ L + TS+ + Sbjct: 126 AVKLPDERWLVGQHPGRRKPPFSFFTTLVIIGLAMGIGAYPIVRRLTRRLERLQTSVEAL 185 Query: 107 AQGDLTARAAAERQPLDEASQLISDFNAMAERLERVQQERNFWNAAIAHELRTPVTILRG 166 G L+ R E + DE +L + FN A R+E + + A +HELR+P+ +R Sbjct: 186 GAGQLSTRIKVEGK--DEVGRLATSFNRSAARIEALVDAQKALLANASHELRSPLARIRM 243 Query: 167 RLQGLSDGVFQPDPALFASLLVQVEGLGRLIEDLRIVGLAESGHLRVQL-QQTDLQQEIV 225 ++ ++ P + L + L +LI+++ + ++ Q+ + DL + Sbjct: 244 AVELMA---ADAQPEMRNELKRNIGELDQLIDEILLASRLDATADATQVFEPIDLTALVA 300 Query: 226 TVLKACESALQDKGFAIALALRLQRTVCDPVRIRQALLALLENALQHATPGALRISTGSV 285 ++ L+ + I RL +R+ + LLENA ++ A+ +S Sbjct: 301 EECARIDAQLETQSVEIPGDARL---------LRRMVRNLLENARRYGNGTAIDVSLEKT 351 Query: 286 DGQHYLRVEDSGPGLAATDAQMIFDAFQRGPRAASAPHKGSGLGLAVVRAIASAHHGTVD 345 + L+V D GPG+ + + IF F R P AS G GLGL++V+ IA AH G V Sbjct: 352 GNKVVLQVCDGGPGVPVAERENIFAPFYRLP-GASEREGGVGLGLSLVQQIARAHGGEVV 410 Query: 346 CQPSALGGTCFQLRWP 361 C GG+CF++ P Sbjct: 411 CTGREGGGSCFKVTLP 426 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 822,009 Number of extensions: 32346 Number of successful extensions: 235 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 216 Number of HSP's successfully gapped: 21 Length of query: 362 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 278 Effective length of database: 910,473 Effective search space: 253111494 Effective search space used: 253111494 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)