BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3834.p (251 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980825|ref|YP_001354044.1| heavy metal response regulator ... 123 1e-29 gi|152980160|ref|YP_001353976.1| phosphate regulon two-component... 118 3e-28 gi|152981180|ref|YP_001353103.1| osmolarity response regulator [... 115 2e-27 gi|152983086|ref|YP_001353412.1| response regulator of copper se... 110 7e-26 gi|152981303|ref|YP_001354918.1| transcriptional regulatory prot... 107 5e-25 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 123 bits (308), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/229 (36%), Positives = 129/229 (56%), Gaps = 11/229 (4%) Query: 24 ILIAEDAPEIAEILAAYLARSGMRSVHAADGAKALELHLSLKPDLVLLDIQMPQVNGWQV 83 IL+ ED + E L L +G A DGA+ L+L L +LV+LD+ +P ++GWQ+ Sbjct: 3 ILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPLLDGWQL 62 Query: 84 LSQIRQRDNTPVIMLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRRSQPRE 143 L ++R+ +TPV+ LTA D+ D++ GL +GADDY+VKPF+ E++ARV +LRR RE Sbjct: 63 LRELRKVRDTPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRRGPVRE 122 Query: 144 DREERRILRVPPFVIDFEQHEAVAEIEGVSHTLVLTLTEFKLLAQLARAPRRVFSRAELL 203 ++ + ID + E L LT EF LL LA+ V SR+ L+ Sbjct: 123 S----SLIEIADMQIDVMKRRVTRNGE----RLDLTAKEFSLLHLLAQRRGEVLSRS-LI 173 Query: 204 ASCLPE--GDTLERTVDSHVSKLRKKLEDLGIAGIPVSIRGVGYRFQQG 250 AS + + D+ VD + +LR KL+D + ++RG+GY ++G Sbjct: 174 ASQVWDMNFDSDTNVVDVAIRRLRAKLDDPHPRKLIQTVRGIGYVLEEG 222 >gi|152980160|ref|YP_001353976.1| phosphate regulon two-component response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 118 bits (296), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 85/230 (36%), Positives = 118/230 (51%), Gaps = 21/230 (9%) Query: 24 ILIAEDAPEIAEILAAYLARSGMRSVHAADGAKALELHLSLKPDLVLLDIQMPQVNGWQV 83 ILI ED P I E++ L +G + A + P L+LLD +P +G ++ Sbjct: 8 ILIVEDEPPIIELVTFTLKGAGWNVAAVQNAGDAWDFIQQRLPQLILLDWMLPDQSGLRL 67 Query: 84 LSQIR---QRDNTPVIMLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRRSQ 140 LS+IR Q + P+IMLTA + DK+ GL GADDYV KPF+P E+ AR+ A+LRR Sbjct: 68 LSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRRKT 127 Query: 141 PREDREERRI--LRVPPFVIDFEQHEAVAEIEGVSHTLVLTLTEFKLLAQLARAPRRVFS 198 P + + + P ++ +I H EFKLL P RVFS Sbjct: 128 PEHSQTLMTAGNISLDPVSCSVSMNDEKIDI---GH------AEFKLLKFFLAHPDRVFS 178 Query: 199 RAELLASCLPEGDTL---ERTVDSHVSKLRKKLEDLGIAGIPVSIRGVGY 245 R++LL GD + ERTVD HV +LRK L+D + ++R VGY Sbjct: 179 RSQLLDKVW--GDHVVIEERTVDVHVLRLRKALKD--AEHLIKTVRSVGY 224 >gi|152981180|ref|YP_001353103.1| osmolarity response regulator [Janthinobacterium sp. Marseille] Length = 248 Score = 115 bits (289), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/215 (35%), Positives = 116/215 (53%), Gaps = 11/215 (5%) Query: 40 YLARSGMRSVHAADGAKALELHLSLKPDLVLLDIQMPQVNGWQVLSQIR-QRDNTPVIML 98 YL+ G V A + +L L + DL++LD+ +P +G + ++R D TP+IML Sbjct: 31 YLSEQGFNVVTAENAQAMNKLWLRERYDLLVLDLMLPGEDGLSICRRLRGAGDKTPIIML 90 Query: 99 TALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRRSQPRE----DREERRILRVP 154 TA +DVD++ GL +GADDY+ KPFNP E+VAR+ AVLRR P E E + Sbjct: 91 TAKGEDVDRIVGLEMGADDYLAKPFNPRELVARISAVLRRVGPEEIPGAPSETPQSFTFG 150 Query: 155 PFVIDFEQHEAVAEIEGVSHTLVLTLTEFKLLAQLARAPRRVFSRAELLASCLP-EGDTL 213 FV+D ++ T+ LT EF +L AR R+ SR +L+ E + Sbjct: 151 EFVLDL----GTRTLKKNDETVPLTTGEFSVLKVFARHARQPLSREKLMELARGREYEVF 206 Query: 214 ERTVDSHVSKLRKKLE-DLGIAGIPVSIRGVGYRF 247 +R++D +S+LRK +E D ++ G+GY F Sbjct: 207 DRSLDVQISRLRKLIEPDPSTPLYIQTVWGLGYVF 241 >gi|152983086|ref|YP_001353412.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] Length = 230 Score = 110 bits (276), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 120/227 (52%), Gaps = 15/227 (6%) Query: 24 ILIAEDAPEIAEILAAYLARSGMRSVHAADGAKALELHLSLKPDLVLLDIQMPQVNGWQV 83 +LI ED + E L L +G +A +G L ++ DL++LD+ +P ++GW++ Sbjct: 3 LLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGSYDLIILDVMLPDIDGWKI 62 Query: 84 LSQIRQRDNT-PVIMLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRRSQPR 142 L +R N+ P + LTA D D++ GL +GADDY+VKPF +E++ARV +LRR P Sbjct: 63 LHALRSAGNSVPALFLTARDGVADRVKGLELGADDYMVKPFAFSELLARVRTLLRRGNPS 122 Query: 143 E--DREERRILRVPPFVIDFEQHEAVAEIEGVSHTLVLTLTEFKLLAQLARAPRRVFSRA 200 DR L+V V+D + A L LT EF LL L R V R+ Sbjct: 123 PLVDR-----LQVSDLVLDLARRAATR----AGKRLTLTNKEFLLLEFLVRHKGEVLPRS 173 Query: 201 ELLASCLPEGDTLERT--VDSHVSKLRKKLEDLGIAGIPVSIRGVGY 245 L+AS + + + T +D + +LR K++D + +IRGVGY Sbjct: 174 -LIASQIWDINFNSDTNVIDVAIRRLRAKMDDDYDPKLISTIRGVGY 219 >gi|152981303|ref|YP_001354918.1| transcriptional regulatory protein OmpR [Janthinobacterium sp. Marseille] Length = 233 Score = 107 bits (268), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 121/235 (51%), Gaps = 25/235 (10%) Query: 28 EDAPEIAEILAAYLARSGMRSVHAADGAKALELHLSLKPD----LVLLDIQMPQVNGWQV 83 ED +A ++A YL ++G H+ ++ L+ +VLLD+ +P +G V Sbjct: 3 EDDQRLASMVATYLNQNGFEVTHSGTASEGLQQLQQAAATQAFAIVLLDLMLPDADGLDV 62 Query: 84 LSQIRQRD----NTPVIMLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRRS 139 QIR + + P++MLTA +D++ GL +GADDY+ KPF P E++AR+ AVLRR Sbjct: 63 CRQIRGQTQPLASMPIVMLTAKGDPMDRVVGLELGADDYIPKPFEPRELLARLRAVLRRQ 122 Query: 140 QPREDREERRILRVPPFVIDFEQHEAVAEIEGVSHTLVLTLTEFKLLAQLARAPRRVFSR 199 Q E R+LR ID + V ++ +T +F LLA +A RV SR Sbjct: 123 QGVATNNE-RVLRFGRLEIDLDAR--VIRLDDQEKP--VTSYQFNLLAAMADRAGRVLSR 177 Query: 200 AELLASCLPEG-DTLERTVDSHVSKLRKKLEDLGIAGIP------VSIRGVGYRF 247 +L+ E + +R++D H+ +LR +ED P +++RG GY F Sbjct: 178 EQLMDVVKGEPLEAFDRSIDVHIGRLRAAIED-----DPKQPKRIITVRGAGYVF 227 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 542,626 Number of extensions: 20422 Number of successful extensions: 178 Number of sequences better than 1.0e-08: 33 Number of HSP's gapped: 156 Number of HSP's successfully gapped: 33 Length of query: 251 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 170 Effective length of database: 921,564 Effective search space: 156665880 Effective search space used: 156665880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)