BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3827.p (287 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981638|ref|YP_001353293.1| LysR family transcriptional reg... 169 3e-43 gi|152982593|ref|YP_001352341.1| LysR family transcriptional reg... 102 2e-23 gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducibl... 91 1e-19 gi|152981653|ref|YP_001353379.1| LysR family transcriptional reg... 88 6e-19 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 81 7e-17 >gi|152981638|ref|YP_001353293.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 298 Score = 169 bits (427), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 106/281 (37%), Positives = 150/281 (53%), Gaps = 8/281 (2%) Query: 1 MELAELEIFRTVVAEGGITRAAERLNRVQSNVTTRIKQLEESIGVPLFVRERRRLVLTAA 60 M+L L +F V G AAER + VQSNVT IK+LE+ +G L R ++A Sbjct: 1 MDLKSLRLFVAVAETGSFVAAAERHHTVQSNVTAHIKKLEDEVGAQLIERGTPARP-SSA 59 Query: 61 GEALLDYAERILDLAQEARQVVAPHSPRGRLRIGSMESAAASRLPTPLAEFHQRWPEVRL 120 G AL+ YAER++ EA + G LR+G+ME+ A RLP L FH PEV L Sbjct: 60 GFALMAYAERMIQAHDEALALFKNGEVSGSLRVGAMETTTALRLPPLLTLFHASHPEVDL 119 Query: 121 ELSTGPTDVLMAGVRTGKLDAALVAGPVDDPAFEATPLYKEELLLVTPRSHRRVRAPGDV 180 +L+TGPT L+AG+ G+ D +AG +++P Y+EEL+LV+ + + + + Sbjct: 120 KLTTGPTAKLVAGLNEGRFDCVFIAGKLENPRLYQYKAYREELVLVSASPMKSMPSADTL 179 Query: 181 ELDTLIVFEQGCAYRRRAEAWFASHSRGGLPLRTLELASYHAILACVAAGAGVAVVPRSV 240 T +VF QGC+YR+R + A G R ++ S AIL CV AG G A++P+ Sbjct: 180 RASTFLVFGQGCSYRQRVDVLLA--DSGVFSSRMVDFGSLDAILGCVGAGMGYALMPK-- 235 Query: 241 LVMQVAPHGFATHSL---GREGRVVTYMISRRERGSASLLA 278 +V H F +SL R G V TY ++ G A LA Sbjct: 236 VVFDAHKHRFPIYSLKLPSRLGVVDTYFVAAPRTGWAPALA 276 >gi|152982593|ref|YP_001352341.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 297 Score = 102 bits (255), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 97/295 (32%), Positives = 142/295 (48%), Gaps = 15/295 (5%) Query: 1 MELAELEIFRTVVAEGGITRAAERLNRVQSNVTTRIKQLEESIGVPLFVRERRRLVLTAA 60 +EL +L F TV E RAA RL+ Q ++ I+ LE +GV LF R R + LT A Sbjct: 3 IELRQLRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALTPA 62 Query: 61 GEALLDYAERILDLAQEARQVV--APHSPRGRLRIGSMESAAASRLPTPLAEFHQRWPEV 118 G ALL A+RIL ++ A GRL + + +A S LP L EF + +P+V Sbjct: 63 GIALLPEAQRILQQTAALPDLMRRAASGASGRLSLAFVSTADYSVLPHFLREFREAYPQV 122 Query: 119 RLELSTGPTDVLMAGVRTGKLDAALVAGPVDDPA---FEATPLYKEELLLVTPRSHRRVR 175 ++L TDV + + G++D L+ P+ D A + P+ E L+L P+ + VR Sbjct: 123 EIDLREATTDVQLDELAQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAVPKGLKAVR 182 Query: 176 APGDVELDT-----LIVFEQGCAYRRRAEAWFASHSRGGL-PLRTLELASYHAILACVAA 229 V L LI+F + A +A A + GL P E I+ V+A Sbjct: 183 GKQTVALQAVAELPLIIFPRRIAPAFH-DAILACYRDAGLTPHIGQEAIQMQTIIGLVSA 241 Query: 230 GAGVAVVPRSVLVMQVAPHGFATHSLGREGRVV-TYMISRRERGSASLLALRSLL 283 G G+A+VP+SV ++ G +L + +V T M RR+ S L A LL Sbjct: 242 GMGIALVPQSVSNLKRP--GVDYKALADKTPLVETGMAWRRDNTSPVLNAFLELL 294 >gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducible genes activator [Janthinobacterium sp. Marseille] Length = 331 Score = 90.5 bits (223), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 10/249 (4%) Query: 1 MELAELEIFRTVVAEGGITRAAERLNRVQSNVTTRIKQLEESIGVPLFVRERRRLVLTAA 60 M L EL+ V E AAE Q ++ IK+LE+ +GV LF R + +T Sbjct: 17 MTLTELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 76 Query: 61 GEALLDYAERILDLAQEARQVVAPHSPR--GRLRIGSMESAAASRLPTPLAEFHQRWPEV 118 G ++ AER+L+ +++ + G R+G + + A LP + +R P++ Sbjct: 77 GAQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKTIIERVPQM 136 Query: 119 RLELSTGPTDVLMAGVRTGKLDAALVAGPVDDPAFEATPLYKEELLLVTPRSHRRVR--- 175 L L T L+ +R G+LDAA+VA P D P+Y E ++ P+ H+ Sbjct: 137 PLVLQENFTVKLLELLRQGELDAAIVALPFPDQGLLVQPVYDEPFVVAVPKHHKWANRDS 196 Query: 176 -APGDVELDTLIVFEQGCAYRRRAEAWFASHSR----GGLPLRTLELASYHAILACVAAG 230 + D++ +T+++ G +R + SR G RT E +S I VA+G Sbjct: 197 VSTDDLKSETMLLLGNGHCFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLETIRHMVASG 256 Query: 231 AGVAVVPRS 239 G+ V+P++ Sbjct: 257 IGITVLPQA 265 >gi|152981653|ref|YP_001353379.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 285 Score = 88.2 bits (217), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 112/235 (47%), Gaps = 12/235 (5%) Query: 6 LEIFRTVVAEGGITRAAERLNRVQSNVTTRIKQLEESIGVPLFVRERRRLVLTAAGEALL 65 L F VV G TRAA+ ++ QS V+ +I++LEE L R R + T GE+LL Sbjct: 7 LRSFVAVVDTGSFTRAADSVHLTQSTVSQQIRRLEEQFDCDLLNRSGRYVATTPEGESLL 66 Query: 66 DYAERILDLAQEARQVVAPHSPRGRLRIGSMESAAASRLPTPLAEFHQRWPEVRLELSTG 125 YA RIL L EA + V +G +++G E AA L LA F +P +RLE+++G Sbjct: 67 GYARRILQLMDEAVEQVTQSVEQGEIQLGVPEDFAAHALTPVLAAFAGNYPGIRLEITSG 126 Query: 126 PTDVLMAGVRTGKLDAALVAGPVDD-PAFEATPLYKEELLLVTPRSHRRVRAPGDVELDT 184 + L + GKLD ALV D P + P E L V S R A D Sbjct: 127 LSHDLYRMFQQGKLDLALVKQRKDSAPGIASWP---EPLCWVD--SLNRPAALRDPV--P 179 Query: 185 LIVFEQGCAYRRR-AEAWFASHSRGGLPLRTLELASYHAILACVAAGAGVAVVPR 238 L+ F G YR A A R + + LAS + A V G G++++PR Sbjct: 180 LVAFPIGGLYRNEMTHALDAIGRRWRIGFVSTSLAS---VSAAVQDGLGISLLPR 231 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 81.3 bits (199), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 127/256 (49%), Gaps = 13/256 (5%) Query: 1 MELAELEIFRTVVAEGGITRAAERLNRVQSNVTTRIKQLEESIGVPLFVRERRRLVLTAA 60 ++L L F V EG +T+AA+R+ Q ++ +I+ LE+ +GV LF R R + LT + Sbjct: 4 IDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMELTES 63 Query: 61 GEALLDYAERILDLAQEARQVVAPHS--PRGRLRIGSMESAAAS-RLPTPLAEFHQRWPE 117 G+ALL A IL+ + V S GRL +G ESAA +P + F Q+ P Sbjct: 64 GQALLIDARLILEQVNTTIEGVRRISLGESGRLAVGFTESAALHPFIPAVIRAFRQKSPG 123 Query: 118 VRLELSTGPTDVLMAGVRTGKLDAALVAGPVDDPA-FEATPLYKEELLLVTPRSHRRVRA 176 V + + T+ L+ +R +LD A + P+ A + + EE+++ P +HR + Sbjct: 124 VIMAVEESNTNELVEDLRHNRLDVAFIRSPIGSAAGLKMETMLVEEMIVALPITHRLAQR 183 Query: 177 PGDVELDTLIVFEQGCAYRRRA------EAWFASHSRGGLPLRTLELASYH-AILACVAA 229 + L L E RR ++ A+ G R ++ A + + L+ VAA Sbjct: 184 RKSLPLTALA--EDDFILNRRPSGPGLYDSVIAACRAAGFSPRVVQEAKKNLSTLSLVAA 241 Query: 230 GAGVAVVPRSVLVMQV 245 G GV++VP S+ +Q+ Sbjct: 242 GLGVSIVPASMRHVQL 257 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.134 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 570,552 Number of extensions: 22383 Number of successful extensions: 149 Number of sequences better than 1.0e-08: 33 Number of HSP's gapped: 137 Number of HSP's successfully gapped: 33 Length of query: 287 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 205 Effective length of database: 917,867 Effective search space: 188162735 Effective search space used: 188162735 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)