BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3826.p (314 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982244|ref|YP_001354284.1| LysR family transcriptional reg... 467 e-133 gi|152981488|ref|YP_001352078.1| LysR family transcriptional reg... 63 2e-11 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 63 2e-11 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 62 6e-11 gi|152982593|ref|YP_001352341.1| LysR family transcriptional reg... 60 1e-10 >gi|152982244|ref|YP_001354284.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 299 Score = 467 bits (1201), Expect = e-133, Method: Compositional matrix adjust. Identities = 219/298 (73%), Positives = 259/298 (86%) Query: 1 MASLNYKHLHYFWTVAKTGGVARASERLHLTAQTISGQISLFEESLGYKLFKRVGRRLEL 60 M+ +NYKHLHYFW VAK+GG+ RASERLHLT QTISGQIS FE+ LGYKLF RVGRRLEL Sbjct: 1 MSGINYKHLHYFWVVAKSGGIGRASERLHLTPQTISGQISQFEDVLGYKLFNRVGRRLEL 60 Query: 61 NDEGRMVFDYAERIFSLGQELEEALRLRPGGRALQLRVGVADAVPKAIAYLLLESALAMQ 120 ND GR+V YA+ IF+LG+EL+E LR RPGG LQ RVGVADAVPKAIAYLLLE A+ + Sbjct: 61 NDAGRVVLGYADEIFTLGEELQEVLRFRPGGWPLQFRVGVADAVPKAIAYLLLEPAMELP 120 Query: 121 EPIRIICREGKLDVLLADLAIHKLDIIIADSPMPPNVDVRGYHHLLGECDTSFFATPALA 180 E +RI+CREGKL LLADLA+H+LDI+IADSPMP N+DVRGY+HLLGEC +FFAT ALA Sbjct: 121 ESLRIVCREGKLTNLLADLAVHRLDIVIADSPMPANIDVRGYNHLLGECGMTFFATDALA 180 Query: 181 RRYRKGFPLSLDGAPFLMPGEDAAVRPRLLRWFEKQGIRPQITGEFDDGALLLAFGDAGA 240 + Y+K FP SLD APFLMPGEDAAVRPRL+RWFEK+ +RP+I GEFDDGALL AFG+AG Sbjct: 181 KTYQKDFPKSLDAAPFLMPGEDAAVRPRLIRWFEKEKVRPRIVGEFDDGALLQAFGEAGK 240 Query: 241 GIFAAPTAIAAQIRKQYGLVDIGKTDAIREQFYAISVERRLSHPAVLAIQSAARGNLV 298 GIFAAP+A+A QI+KQYG+ +IG+T+A+ EQFYAISVER+L+HPAV+AI SAAR +L+ Sbjct: 241 GIFAAPSAVAEQIKKQYGVTEIGRTNAVSEQFYAISVERQLTHPAVVAISSAARESLI 298 >gi|152981488|ref|YP_001352078.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 326 Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 8/162 (4%) Query: 1 MASLNYKHLHYFWTVAKTGGVARASERLHLTAQTISGQISLFEESLGYKLFKRVGRRLEL 60 M + + L F TVA+ +RA+E LHLT +S Q+ EE G LF+++G+++ L Sbjct: 1 MKNATLRQLKVFETVARHLSFSRAAEELHLTQPAVSTQVKKLEEHAGLALFEQLGKKIYL 60 Query: 61 NDEGRMVFDYAERIFSLGQELEEALRLRPGGRALQLRVGVADAVPKAIAYLLLESALAMQ 120 G + Y+ I QE E+A+ G +L V V A LL+E A + Q Sbjct: 61 TPGGSELLHYSRTIIQQFQEAEDAMTQFKGITGGKLNVAVISAGDYFFPRLLVEFARSHQ 120 Query: 121 E---PIRIICREGKLDVLLADLAIHKLDIIIADSPMPPNVDV 159 + + REG L+ + ++L DI I P P ++D Sbjct: 121 GVTLNLSVHNREGLLNQMTSNLT----DIAIMVRP-PTDMDT 157 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/263 (25%), Positives = 116/263 (44%), Gaps = 25/263 (9%) Query: 1 MASLNYKHLHYFWTVAKTGGVARASERLHLTAQTISGQISLFEESLGYKLFKRVGRRLEL 60 M+S++ + L YF VA+ G + +A++R+ + +S QI E+ LG LF+R+ R +EL Sbjct: 1 MSSIDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMEL 60 Query: 61 NDEGRMVFDYAERIFSLGQELEEALRLRPGGRALQLRVGVADA------VPKAIAYLLLE 114 + G+ + A I E +R G + +L VG ++ +P I Sbjct: 61 TESGQALLIDARLILEQVNTTIEGVRRISLGESGRLAVGFTESAALHPFIPAVI------ 114 Query: 115 SALAMQEP-IRIICREGKLDVLLADLAIHKLDIIIADSPMPPNVDVRGYHHLLGECDTSF 173 A + P + + E + L+ DL ++LD+ SP+ ++ L+ E + Sbjct: 115 RAFRQKSPGVIMAVEESNTNELVEDLRHNRLDVAFIRSPIGSAAGLKMETMLVEEMIVAL 174 Query: 174 FATPALARRYRKGFPLS-LDGAPFLM------PGEDAAVRPRLLRWFEKQGIRPQITGEF 226 T LA+R RK PL+ L F++ PG +V + G P++ E Sbjct: 175 PITHRLAQR-RKSLPLTALAEDDFILNRRPSGPGLYDSV----IAACRAAGFSPRVVQEA 229 Query: 227 DDGALLLAFGDAGAGIFAAPTAI 249 L+ AG G+ P ++ Sbjct: 230 KKNLSTLSLVAAGLGVSIVPASM 252 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 61.6 bits (148), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 42/70 (60%) Query: 4 LNYKHLHYFWTVAKTGGVARASERLHLTAQTISGQISLFEESLGYKLFKRVGRRLELNDE 63 + +HL YF A++ RASE LH+T T+S QI E+ LG +LF RVGR ++L Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTA 60 Query: 64 GRMVFDYAER 73 G + YA+R Sbjct: 61 GELFQVYAKR 70 >gi|152982593|ref|YP_001352341.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 297 Score = 60.5 bits (145), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 111/255 (43%), Gaps = 10/255 (3%) Query: 3 SLNYKHLHYFWTVAKTGGVARASERLHLTAQTISGQISLFEESLGYKLFKRVGRRLELND 62 ++ + L +F TVA+ RA+ RLH+T +S I E LG +LF+R R + L Sbjct: 2 NIELRQLRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALTP 61 Query: 63 EGRMVFDYAERIFSLGQELEEALRLRPGGRALQLRVG-VADAVPKAIAYLLLESALAMQE 121 G + A+RI L + +R G + +L + V+ A + + L E A + Sbjct: 62 AGIALLPEAQRILQQTAALPDLMRRAASGASGRLSLAFVSTADYSVLPHFLREFREAYPQ 121 Query: 122 PIRIICREGKLDVLLADLAIHKLDIIIADSPMPPNVDVR-GYHHLLGECDTSFFATPALA 180 + I RE DV L +LA ++D+ + P+P ++ Y +L E A P Sbjct: 122 -VEIDLREATTDVQLDELAQGRIDVGLLIPPLPDKAKLQLDYLPVLSE--PLILAVPKGL 178 Query: 181 RRYRKGFPLSLDGA---PFLM-PGEDA-AVRPRLLRWFEKQGIRPQITGEFDDGALLLAF 235 + R ++L P ++ P A A +L + G+ P I E ++ Sbjct: 179 KAVRGKQTVALQAVAELPLIIFPRRIAPAFHDAILACYRDAGLTPHIGQEAIQMQTIIGL 238 Query: 236 GDAGAGIFAAPTAIA 250 AG GI P +++ Sbjct: 239 VSAGMGIALVPQSVS 253 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.139 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 680,596 Number of extensions: 26549 Number of successful extensions: 111 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 111 Number of HSP's successfully gapped: 6 Length of query: 314 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 231 Effective length of database: 914,170 Effective search space: 211173270 Effective search space used: 211173270 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)