BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3822.p (1558 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980727|ref|YP_001354991.1| glutamate synthase (NADPH) larg... 2846 0.0 gi|152980948|ref|YP_001352058.1| glutamate synthase large subuni... 139 1e-33 >gi|152980727|ref|YP_001354991.1| glutamate synthase (NADPH) large chain [Janthinobacterium sp. Marseille] Length = 1562 Score = 2846 bits (7379), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1355/1550 (87%), Positives = 1460/1550 (94%), Gaps = 2/1550 (0%) Query: 1 MHAQGLYDPANEHDACGVGFIAHIKGKKSHSIVDQGLLILKNLDHRGAVGADALMGDGAG 60 MHAQGLYDPANEHDACGVGF+AHIKGKKSHSIV+QGLLILKN+DHRGAVGAD LMGDGAG Sbjct: 1 MHAQGLYDPANEHDACGVGFVAHIKGKKSHSIVEQGLLILKNIDHRGAVGADKLMGDGAG 60 Query: 61 ILIQIPDQYYREEMAKQGVDLPPPGEYGVGMIFLPKENASRIACEQEIERSVLAEGQIVL 120 ILIQIPDQYYREEMAKQGV LPP GEYGVGM+FLPKENASRIACEQE+ERSVLAEGQ+VL Sbjct: 61 ILIQIPDQYYREEMAKQGVTLPPAGEYGVGMVFLPKENASRIACEQELERSVLAEGQVVL 120 Query: 121 GWRDVPVDRDMPMSPTVREKEPVIRQIFIGRGPDVMVTDALERKLYVIRKSSGHAIQALN 180 GWRDV VD++MPMSPTVR+KEPVIRQIFIGRG D+MVTDALERKLYVIRK+SGHAIQAL+ Sbjct: 121 GWRDVLVDKEMPMSPTVRDKEPVIRQIFIGRGQDIMVTDALERKLYVIRKASGHAIQALH 180 Query: 181 LLHGKEFFVPSMSARTVVYKGLLLADQVGVYYKDLQDERCVSALALVHQRFSTNTFPEWP 240 LLHG+EFFVPSMSARTVVYKGLLLADQVG YYKDLQD RCVSALALVHQRFSTNTFPEWP Sbjct: 181 LLHGQEFFVPSMSARTVVYKGLLLADQVGEYYKDLQDPRCVSALALVHQRFSTNTFPEWP 240 Query: 241 LAHPYRLIAHNGEINTVKGNFNWMRAREGVMQSAVLGADLKKLFPLIYEGQSDTASFDNA 300 LAHPYRL+AHNGEINTVKGNFNWMRAREGVM+SAVLG DLKKLFPLIYEGQSDTA FDNA Sbjct: 241 LAHPYRLLAHNGEINTVKGNFNWMRAREGVMKSAVLGDDLKKLFPLIYEGQSDTACFDNA 300 Query: 301 LELLVMAGYPLPQAMMMMVPEAWENHTSMDDNRRAFYEYHAAMMEPWDGPAALAFTDGRH 360 LELLVMAGYP+ QAMMMM+PEAWENHT+MDDNRRAFYEYHAAMMEPWDGPAA+AFTDGRH Sbjct: 301 LELLVMAGYPIAQAMMMMIPEAWENHTTMDDNRRAFYEYHAAMMEPWDGPAAMAFTDGRH 360 Query: 361 IGGTLDRNGLRPARYIVTDDDLVVMASESGVLPIPESKIIQKWRLQPGKMFLIDLDAGRI 420 IGGTLDRNGLRPARYIVTDDDLVVMASESGVLPIPESKIIQKWRLQPGKMFLIDLDAGRI Sbjct: 361 IGGTLDRNGLRPARYIVTDDDLVVMASESGVLPIPESKIIQKWRLQPGKMFLIDLDAGRI 420 Query: 421 IDDKELKDTYANAKPYKQWINSVRVKLDELKEEPRQPSSPLKLLDLQQVFGYTQEDVKFL 480 IDDKELKDTYANAKPYKQWI SVR+KL+EL +E + S LLDLQQ FGYTQED+KFL Sbjct: 421 IDDKELKDTYANAKPYKQWIESVRIKLNELNKEAAEAKSKTALLDLQQAFGYTQEDLKFL 480 Query: 481 MAPMASGGEEAIGSMGNDSPLAVMSNKNKPLYNYFRQLFAQVTNPPIDPIREALVMSLVS 540 M+PMA+ EEA GSMGNDSPLAVMSNK+K LYNYFRQLFAQVTNPPIDPIREA+VMSLVS Sbjct: 481 MSPMATTAEEATGSMGNDSPLAVMSNKDKTLYNYFRQLFAQVTNPPIDPIREAMVMSLVS 540 Query: 541 FIGPKPNLLDTNNINPPMRLEVSQPVLDYDDIAKLRNISAHSGGKFKSYELNICYPVAWG 600 FIGPKPNLLDTNNINPPMRLEVSQPVLDY DIAKLRNI AH+GGKFKS+ELNICYP AWG Sbjct: 541 FIGPKPNLLDTNNINPPMRLEVSQPVLDYADIAKLRNIGAHTGGKFKSHELNICYPTAWG 600 Query: 601 KEGIEARLASLCAKAVDAVKSGHNILIISDRKVDADQLPIPALLATSAIHQHLVSKGLRT 660 KEGIEARLASLCA+AVDAV+SGHNILIISDRK+D + + IPALLATSAIH HLVSKG+RT Sbjct: 601 KEGIEARLASLCAQAVDAVQSGHNILIISDRKIDENHVAIPALLATSAIHLHLVSKGMRT 660 Query: 661 STGLVVETGSARETHHFALLAGYGAEAIHPYLAMDTLADLAKGLPGDLSPEKAIYNFQKA 720 STGLVVETGSARETHHFALLAGYGAEAIHPYLAMDT+++++KGLPGDLSPEKAI NFQKA Sbjct: 661 STGLVVETGSARETHHFALLAGYGAEAIHPYLAMDTVSEMSKGLPGDLSPEKAIANFQKA 720 Query: 721 VGKGLLKVMSKMGISTYMSYCGAQIFEAIGLSKALVDKYFKGTASNVEGIGVFEVAEEAL 780 VGKGL+KVMSKMGISTYMSYCGAQIFEAIGL+K+L+ KYFKGT+SNVEGIGVFEVAEEAL Sbjct: 721 VGKGLMKVMSKMGISTYMSYCGAQIFEAIGLNKSLIQKYFKGTSSNVEGIGVFEVAEEAL 780 Query: 781 RLHTAAFSADPVLANALDAGGEYAFRIRGEEHMWTPDAIAKLQHSTRSNSYNTYKEYAQI 840 RLH +AFSADPVLA++LDAGGEYA+R+RGEEHMWTPDAIAKLQHSTR+N+++TYKEYAQI Sbjct: 781 RLHKSAFSADPVLAHSLDAGGEYAYRVRGEEHMWTPDAIAKLQHSTRANNFSTYKEYAQI 840 Query: 841 INDQSKRHMTLRGLFEFKIDPSKAISIDEVEPAKEIVKRFATGAMSLGSISTEAHATLAI 900 INDQSKRHMTLRGLFEFK DP+ AI +DEVEPAKEIVKRFATGAMSLGSISTEAHATLAI Sbjct: 841 INDQSKRHMTLRGLFEFKFDPASAIPLDEVEPAKEIVKRFATGAMSLGSISTEAHATLAI 900 Query: 901 AMNRIGGKSNTGEGGEDVNRYRNELKGIPIKQGATLASEIGREHIEVDIPLLEGDSLRSR 960 AMNRIGGKSNTGEGGED RYR+EL+GIPIK G+TLAS IG++ +EVD+PL+ GDSLRS+ Sbjct: 901 AMNRIGGKSNTGEGGEDTKRYRSELRGIPIKDGSTLASVIGKDVVEVDMPLMPGDSLRSK 960 Query: 961 IKQVASGRFGVSAEYLISADQIQIKMAQGAKPGEGGQLPGHKVSEYIAKLRVSVPGVGLI 1020 IKQVASGRFGV+ EYL SA+QIQIKMAQGAKPGEGGQLPGHKVSEYIA+LR SVPGVGLI Sbjct: 961 IKQVASGRFGVTTEYLTSAEQIQIKMAQGAKPGEGGQLPGHKVSEYIARLRFSVPGVGLI 1020 Query: 1021 SPPPHHDIYSIEDLAQLIHDLKNVNPRASISVKLVSEVGVGTVAAGVAKAKSDHVVIAGH 1080 SPPPHHDIYSIEDLAQLIHDLKNVNP ASISVKLV+EVGVGTVA GVAKAK+DHVVIAGH Sbjct: 1021 SPPPHHDIYSIEDLAQLIHDLKNVNPSASISVKLVAEVGVGTVATGVAKAKADHVVIAGH 1080 Query: 1081 DGGTGASPLSSIKHAGSPWELGLAETQQTLVLNGLRNRIRVQADGQMKTGRDVVIGAMLG 1140 DGGTGASPLSS+K AGSPWELGLAETQQTL+LNGLR RIRVQADGQMKTGRDVVI A+LG Sbjct: 1081 DGGTGASPLSSVKFAGSPWELGLAETQQTLILNGLRTRIRVQADGQMKTGRDVVIAALLG 1140 Query: 1141 ADEFGFATAPLVVEGCIMMRKCHLNTCPVGVATQDPVLRAKFSGKPEHVVNFFFFIAEEA 1200 ADE GF+TAPLVVEGCIMMRKCHLNTCPVGVATQDPVLRAKFSGKPEHVVN+FFFIAEEA Sbjct: 1141 ADEMGFSTAPLVVEGCIMMRKCHLNTCPVGVATQDPVLRAKFSGKPEHVVNYFFFIAEEA 1200 Query: 1201 RQIMAQLGIRKFDDLIGRADLLDRSKAIAHWKAKGLDFSRIFHQPESKLPV--YHTDVQD 1258 RQIMAQLGIR FD+LIGRADLLD+SKAI+HWKAKGLDFSR+F+QP V YH + QD Sbjct: 1201 RQIMAQLGIRTFDELIGRADLLDKSKAISHWKAKGLDFSRMFYQPPVAEGVARYHVEGQD 1260 Query: 1259 HGLDKALDHKLIAQAKIALEKGEKVSFISPIKNLNRTVGAMLSGEVAKRYGDEGLPDDTI 1318 H L+KALD+KLIAQAK A+E GEKVSFIS IKN+NRTVGAMLSG+VAK+YG EGLPDDTI Sbjct: 1261 HALEKALDNKLIAQAKAAIENGEKVSFISTIKNVNRTVGAMLSGQVAKKYGHEGLPDDTI 1320 Query: 1319 HIQLQGTAGQSAGAFLAKGVTLDLVGEGNDYVGKGLSGGRIIVRPNTEFRGRAVDNMISG 1378 HIQLQGTAGQSAGAFLA G+TLDLVGEGNDYVGKGLSGGRIIVRPNTEFRGRAV+N+ISG Sbjct: 1321 HIQLQGTAGQSAGAFLAHGITLDLVGEGNDYVGKGLSGGRIIVRPNTEFRGRAVENIISG 1380 Query: 1379 NTVLYGAISGEAFINGVAGERFAVRNSGAIAVVEGTGDHGCEYMTGGTVVVLGNTGRNFA 1438 NT+LYGA++GEAF NGVAGERFAVRNSGAIAVVEGTGDHGCEYMTGGTVVVLG TGRNFA Sbjct: 1381 NTLLYGAVAGEAFFNGVAGERFAVRNSGAIAVVEGTGDHGCEYMTGGTVVVLGETGRNFA 1440 Query: 1439 AGMSGGIAYVYDPEGDFAGKCNTAMVSLEKVLSDTEQEQTLGRNIWHSLLRGGERQTDEA 1498 AGMSGGIAYVYDP+GDFA KCN AMV+L V S EQE WHS +RG + QTDEA Sbjct: 1441 AGMSGGIAYVYDPKGDFASKCNMAMVALHPVESAAEQEDKAEHASWHSHVRGADAQTDEA 1500 Query: 1499 ILRGLIERHFKYTGSTRARYLLDNWAASRAKFVKVFPTEYKRALAELAAA 1548 IL+GLIERHFKYTGSTRAR LLD W+++R+KFVKVFP+EYKRALAE+ AA Sbjct: 1501 ILKGLIERHFKYTGSTRARALLDEWSSARSKFVKVFPSEYKRALAEMHAA 1550 >gi|152980948|ref|YP_001352058.1| glutamate synthase large subunit [Janthinobacterium sp. Marseille] Length = 540 Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 110/344 (31%), Positives = 159/344 (46%), Gaps = 25/344 (7%) Query: 880 FATGAMSLGSISTEAHATLAIAMNRIGGKSNTGEGGEDVNRYRNELKGIPIKQGATLASE 939 F AMS G++S A L + G +TGEG ++RY P G L E Sbjct: 155 FNISAMSFGALSANAIRALNQGAQKGGFMHDTGEG--SISRYHKPDN--PNDAGGDLVWE 210 Query: 940 IGREHIEVDIPLLEGDSLRSRIKQVASGRFGVSAEYLISADQIQIKMAQGAKPGEGGQLP 999 IG + R+ ++ +F ++A+ L I++K++QGAKPG GG LP Sbjct: 211 IGSGYF----------GCRNDDGSFSAEKFALNAQ-LPQVKMIEVKLSQGAKPGHGGVLP 259 Query: 1000 GHKVSEYIAKLRVSVPGVGLISPPPHHDIYSIEDLAQLIHDLKNVNPRASISVKLVSEVG 1059 G KVS IA R GV +SP H S L Q I L+N++ KL VG Sbjct: 260 GAKVSVEIAAARGIPLGVDCVSPSSHSAFDSPIGLLQFIEQLRNLSGGKPTGFKLA--VG 317 Query: 1060 VGTVAAGVAKA------KSDHVVIAGHDGGTGASPLSSIKHAGSPWELGLAETQQTLVLN 1113 G+ KA D +VI G +GGTGA+P+ H G P + L TLV Sbjct: 318 HPWEFFGIVKAMLATGITPDFIVIDGGEGGTGAAPVEFTDHVGVPLQEALLLAHNTLVGA 377 Query: 1114 GLRNRIRVQADGQMKTGRDVVIGAMLGADEFGFATAPLVVEGCIMMRKCHLNTCPVGVAT 1173 LR+++++ A G++ + D+V LGAD A + GCI + CH + CP G+AT Sbjct: 378 KLRDKVKIGASGKIVSAFDIVRTLALGADWCNSARGFMFALGCIQSQSCHTDRCPTGIAT 437 Query: 1174 QDPVLRAKF--SGKPEHVVNFFFFIAEEARQIMAQLGIRKFDDL 1215 QD + + K E V NF + +++A G+ +L Sbjct: 438 QDNLRQRALVVPDKAERVANFHRNTLKALAELIAAAGLHHPSEL 481 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 3,669,175 Number of extensions: 161558 Number of successful extensions: 447 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 443 Number of HSP's successfully gapped: 2 Length of query: 1558 Length of database: 1,221,021 Length adjustment: 96 Effective length of query: 1462 Effective length of database: 866,109 Effective search space: 1266251358 Effective search space used: 1266251358 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 136 (57.0 bits)