BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3819.p
         (202 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980425|ref|YP_001354819.1| large subunit ribosomal protein...   316   5e-88

>gi|152980425|ref|YP_001354819.1| large subunit ribosomal protein
           L25 [Janthinobacterium sp. Marseille]
          Length = 214

 Score =  316 bits (810), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 154/190 (81%), Positives = 169/190 (88%), Gaps = 3/190 (1%)

Query: 1   MKVIAFARNEQGTGASRRLRRAGQTPGIVYGGTAAPLNIAVDHNALYHALKKETFHSSIL 60
           MKVIAFAR E GTGASRR R AG TPGIVYGGTAAP+NI++DHNALYHALKKE FHSSIL
Sbjct: 1   MKVIAFARKELGTGASRRQRIAGLTPGIVYGGTAAPVNISLDHNALYHALKKEAFHSSIL 60

Query: 61  DLEIDGKVEQVLLRDFQVHAYKQLVLHVDFQRVDASQKLHTKVPLHFVNAEVSPAVKLHG 120
           DLE+DGKVEQVLLRDFQVHAYKQLVLH DFQRVDA QK+H KVPLHFVNAE SPAVKLHG
Sbjct: 61  DLEVDGKVEQVLLRDFQVHAYKQLVLHADFQRVDAKQKIHVKVPLHFVNAETSPAVKLHG 120

Query: 121 GIISHVAAELDVTCLPKNLPEFIEVDLSKLDVGQSIHLGDLKLPNGVTAVT---QENLTI 177
           GIISHVA+ELD+TCLP +LPEF+EVDL+ LDVG SIHL D+KLP GV AV    ++N TI
Sbjct: 121 GIISHVASELDITCLPSDLPEFVEVDLANLDVGHSIHLADIKLPKGVAAVIHGGEDNPTI 180

Query: 178 ATATVPAGQV 187
           ATA+VPAG+V
Sbjct: 181 ATASVPAGKV 190


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 423,695
Number of extensions: 16754
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 123
Effective length of database: 928,958
Effective search space: 114261834
Effective search space used: 114261834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)