BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3818.p
         (316 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980563|ref|YP_001354818.1| ribose-phosphate pyrophosphokin...   592   e-170

>gi|152980563|ref|YP_001354818.1| ribose-phosphate pyrophosphokinase
           [Janthinobacterium sp. Marseille]
          Length = 316

 Score =  592 bits (1525), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 288/316 (91%), Positives = 306/316 (96%)

Query: 1   MALENLMVFTGNANPELARGVAEKLGIPLGKANVSKFSDGEVMVEINENVRGKDVFVLQS 60
           MALENLMVFTGNANP+LA GVA++LG+PLGKA VSKFSDGE++VEINENVRGKDVFVLQS
Sbjct: 1   MALENLMVFTGNANPDLALGVAKQLGLPLGKAVVSKFSDGEIVVEINENVRGKDVFVLQS 60

Query: 61  TCAPTNDNLMEIMIMVDALKRASAGRITAAIPYYGYARQDRRPRSARVAISAKVVANMLQ 120
           TCAPTNDNLMEIM+MVDALKRASAGRITAAIPYYGYARQDRRPRSARVAISAKVVANMLQ
Sbjct: 61  TCAPTNDNLMEIMLMVDALKRASAGRITAAIPYYGYARQDRRPRSARVAISAKVVANMLQ 120

Query: 121 EAGVERVLIMDLHADQIQGFFDIPVDNIYASPILLGDLVNKNYEDLLVVSPDVGGVVRAR 180
           EAGVERVLIMDLHADQIQGFFDIPVDNIYASPILL DLV KN+EDLLVVSPDVGGVVRAR
Sbjct: 121 EAGVERVLIMDLHADQIQGFFDIPVDNIYASPILLRDLVTKNHEDLLVVSPDVGGVVRAR 180

Query: 181 ALAKRLNCDLAIIDKRRPKANVSEVMNIIGEVEGRNCVIMDDMVDTAGTLTKAAEVLKER 240
           ALAKRLNCDLAIIDKRRPKANVSEVMNIIGEVEGRNCVIMDDMVDTAGTLTKAAEVLKER
Sbjct: 181 ALAKRLNCDLAIIDKRRPKANVSEVMNIIGEVEGRNCVIMDDMVDTAGTLTKAAEVLKER 240

Query: 241 GAKKVVAYCTHPVLSGPAIDRIANSPLDELVVTDTIPLSPAARGCPKVRQLTCADLLAET 300
           GAKKV+AYCTHPVLSGPAI+RI  SPLDELVVTDTIPL+ AA+ CPK+R L+CA+LLAET
Sbjct: 241 GAKKVIAYCTHPVLSGPAIERITTSPLDELVVTDTIPLTEAAKACPKIRVLSCAELLAET 300

Query: 301 FKRITKGDSVMSLFAE 316
           FKRI+ GDSVMS+FA+
Sbjct: 301 FKRISTGDSVMSMFAD 316


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.136    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 680,571
Number of extensions: 26747
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 233
Effective length of database: 914,170
Effective search space: 213001610
Effective search space used: 213001610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)