BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3817.p
         (289 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980074|ref|YP_001354817.1| 4-diphosphocytidyl-2-C-methyl-D...   377   e-106

>gi|152980074|ref|YP_001354817.1|
           4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
           [Janthinobacterium sp. Marseille]
          Length = 289

 Score =  377 bits (969), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/293 (65%), Positives = 228/293 (77%), Gaps = 8/293 (2%)

Query: 1   MSTTLTACPAPAKLNLFLHVTGRRPDGYHLLQSAFQLIDRCDTLDFSLREDGRIVRTNEV 60
           M+ TL  CPAPAKLNLFLHVTGRR DGYHLLQS FQLIDR D L F+ R+D  I RT ++
Sbjct: 1   MTLTLNHCPAPAKLNLFLHVTGRRADGYHLLQSVFQLIDRGDVLHFATRDDNLIQRTTDL 60

Query: 61  PGVPAESDLVIRAAHLLRQASGQPH----LGADITVHKVLPMGGGVGGGSSDAATTLMVL 116
           PGVPAESDLV+RAA LL+  + + +     GADI V K LPMGGG+GGGSSDAATTL+ L
Sbjct: 61  PGVPAESDLVVRAAKLLQTVATEKNPAKNFGADIAVEKKLPMGGGLGGGSSDAATTLLAL 120

Query: 117 NHLWKCGYNRASLMKMGLQLGADVPFFLFGRNAFAEGVGEELSALRTADCWYVVIEPGVS 176
           NHLW+ G +RA LM +GLQLGADVPFF+FG+NAFAEG+GE L  + T D W+VVIEPGVS
Sbjct: 121 NHLWQTGLSRAELMALGLQLGADVPFFIFGQNAFAEGIGEALVEVETPDRWFVVIEPGVS 180

Query: 177 VPTSIIFSSKLLTRDTKPVRITDFPDATKQVASSFGKNDLEMVATAHFPEVAAAVEWLGK 236
           VPT  IFSS  LTRDTKPV+I+DF  A +    SFGKNDL++VA   FP +A A++WLG+
Sbjct: 181 VPTPQIFSSTELTRDTKPVKISDFSGAQE----SFGKNDLQVVAEKLFPPIAEAIQWLGQ 236

Query: 237 FGNARMTGSGACVFCAFEHEHEADEVIKQLPSRWIGWKAKAMQEHPLAHLVQS 289
           +G+ARMTGSGACVFC FE E +AD V+  +P  W  WKAKA++ HPLA+L QS
Sbjct: 237 YGDARMTGSGACVFCPFEQEQQADAVLTTVPPHWKAWKAKAIKHHPLAYLQQS 289


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 657,150
Number of extensions: 25282
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 207
Effective length of database: 917,867
Effective search space: 189998469
Effective search space used: 189998469
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)