BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3816.p
         (207 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982003|ref|YP_001354816.1| outer membrane lipoprotein LolB...   195   2e-51

>gi|152982003|ref|YP_001354816.1| outer membrane lipoprotein LolB
           [Janthinobacterium sp. Marseille]
          Length = 206

 Score =  195 bits (495), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 98/202 (48%), Positives = 133/202 (65%), Gaps = 6/202 (2%)

Query: 10  ATTLCAAALLGGCATVS---QDAVPTGTAAAAYQNNIEIDGRISVQYEQDQRPQSLHGSF 66
           A  + + ALLG CA+++   + A     +A  YQ  I + GR+SVQY++D + +++HGSF
Sbjct: 7   AILIMSTALLGACASITPPTEQASEQVASARKYQEAITLGGRLSVQYQKDDKDEAIHGSF 66

Query: 67  FWKQTAQELNLEMFSPLGQTVATINVKPGIATLVQSGRAPQVAADVDALAAQSLGWPLPV 126
            WKQ+    ++ + SPLGQ +ATI V    ATL+QSG+AP+ AADVD L  Q+LGWPLPV
Sbjct: 67  TWKQSQDRSSIAILSPLGQILATIEVTHDNATLIQSGQAPRSAADVDLLVEQTLGWPLPV 126

Query: 127 SGMRQWLQGSGVDASGRPFVAKAGEDDTSYNTRDGWRVTYANWETDAAS-GQTRPKRIDL 185
           SG+R WLQG   D + + F+A    +  +  TRDGW + Y  WE+D  S  Q RPKRIDL
Sbjct: 127 SGLRSWLQGFANDTNNKKFIATPVNNKVT--TRDGWNIQYPTWESDQQSPPQDRPKRIDL 184

Query: 186 SRNTSQAGKVSIRIAIDGWKQP 207
            R T QAGKV+IRI +D W+ P
Sbjct: 185 ERQTEQAGKVAIRIVLDTWQTP 206


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.128    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 414,723
Number of extensions: 15399
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 128
Effective length of database: 928,958
Effective search space: 118906624
Effective search space used: 118906624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)