BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3815.p
         (600 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982745|ref|YP_001354815.1| hypothetical protein mma_3125 [...   632   0.0  

>gi|152982745|ref|YP_001354815.1| hypothetical protein mma_3125
           [Janthinobacterium sp. Marseille]
          Length = 598

 Score =  632 bits (1629), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/601 (53%), Positives = 431/601 (71%), Gaps = 4/601 (0%)

Query: 1   LKKTIALLTSSLLLTACSSFQ-QPGDKANAQAAQDQKTAAAKAGNRKKAPKAKVQPQEDA 59
           +K  + ++T S L+TA ++ Q QP     A AA  +  A   A     + KA     ED 
Sbjct: 1   MKNALVIVTLSALITATANTQAQPQTPETAAAATQESPAPLTAKPPASSKKAATGKTEDP 60

Query: 60  LPAVELTEDILYKVLTAEIAFQRGQWQSAYVTMLSAAQQTRDPRLAKRAAEMAVAARQAG 119
           LP+V+LT  +LYK+L AE+A QRG WQ AYV+ML  AQ+TRDPRLA+RAA++A++A+Q  
Sbjct: 61  LPSVQLTAPLLYKLLRAELALQRGDWQLAYVSMLVTAQETRDPRLAERAAKVALSAKQVS 120

Query: 120 EALVAVRLWTELAPHSDEALQNYLGLIMLSDSVDEIEPLLTQRLADAAPQARGPMIMQVQ 179
           EAL AVRLW ELAP+SDEA Q YLGLI+L D++ E  P+L +RL  A+PQ RG +I+++Q
Sbjct: 121 EALSAVRLWHELAPNSDEANQFYLGLIILGDNLKEARPILIERLRLASPQTRGVLILEIQ 180

Query: 180 RLLARAKDKKASYTILQNITKPYGDLLETHLALAQGAFGLGDAATAQREAATALKIKPDS 239
           RLLA  KDK A++ +L+ +T PY DL+ETHLALAQ AF   D A A  EA  ALK+KPD 
Sbjct: 181 RLLANTKDKNAAFALLEEVTTPYQDLVETHLALAQSAFTKNDIARANSEAHIALKLKPDM 240

Query: 240 ELAVLTAAQVAFTNADATKLVTDFLRKYPDSREVRVAYARSLVEQKDYKQARTQFETLLK 299
           ELA L  AQ   + A+A +++TDF++  P +REVRVAYA+ L++ K Y QAR QFE LLK
Sbjct: 241 ELAALMVAQSTSSRAEALQILTDFIKANPKAREVRVAYAKILIDNKQYDQAREQFEQLLK 300

Query: 300 EDGEDATTLFALGVLSAQTDQLKDAEYYLQRYLQVLSAQPEDDRDPSQALLLLSRIAEER 359
           +D +D T L+A+G+L AQT+ +  AE YL  YLQ L   P++ RDP QA L++S+IAE+R
Sbjct: 301 DDPKDLTILYAMGILGAQTNDIPMAEKYLSAYLQALEDNPDESRDPVQAQLIMSQIAEDR 360

Query: 360 RDLDSALRYLDQAEPGSEGYVNIQVRRAQLLARKNDIDAARKALEDAQADSNNDGEQLQL 419
           +D  +AL++L Q EPG   Y+  Q+R AQL+A   D++  R  L   +       EQ+Q+
Sbjct: 361 KDYATALKWLAQVEPGP-AYMAAQIRSAQLMAIGGDLNGGRNLLSHLKPQGQR--EQIQV 417

Query: 420 MLAESSLLRDANRNQEAADVLKGGLQRFPNNTDLLYDYSMVLEKLGKYDEMEKALRRVIQ 479
           ++A++ LLRDANR  EA  VL  GL+RFP++T LLYDY+M+ EK  K D ME ALR++I+
Sbjct: 418 IVADAQLLRDANRVPEAMTVLSNGLKRFPDDTGLLYDYAMLAEKANKMDVMETALRKIIR 477

Query: 480 LAPGNQQAYNALGYSLADRNVRLPEALELIQKAADMAPEDPFIADSLGWVQFRMGRTEQA 539
           LAP NQ AYNALGYS ADRN+ L EAL LI+KA+ +APEDPFI DS+GWVQFR+GR ++A
Sbjct: 478 LAPDNQHAYNALGYSFADRNIHLQEALALIEKASKIAPEDPFIMDSMGWVQFRLGRLQEA 537

Query: 540 EAQLRRAYGLRPDVEIGVHLGEVLWANGKQDEARKVWREVSLKEPQNEVLKSTLARLNVK 599
           E  LRRAY +RPDVEIGVHLGEVLW  G++ EA+K WR+ + K+PQ+++LKSTL RL  +
Sbjct: 538 ENYLRRAYAIRPDVEIGVHLGEVLWVKGQRAEAQKFWRDANQKDPQSDLLKSTLTRLRAQ 597

Query: 600 L 600
           L
Sbjct: 598 L 598


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.129    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,159,466
Number of extensions: 43426
Number of successful extensions: 200
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1,221,021
Length adjustment: 89
Effective length of query: 511
Effective length of database: 891,988
Effective search space: 455805868
Effective search space used: 455805868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)