BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3813.p
         (380 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980113|ref|YP_001354812.1| A/G-specific adenine glycosylas...   510   e-146

>gi|152980113|ref|YP_001354812.1| A/G-specific adenine glycosylase
           [Janthinobacterium sp. Marseille]
          Length = 384

 Score =  510 bits (1314), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 250/382 (65%), Positives = 287/382 (75%), Gaps = 5/382 (1%)

Query: 1   MKGIVESRRKTAAPGDATGE----QYEDPSFAAAVIAWQKQHGRHQLPWQNTRDAYRVWL 56
           MK +V   R  A P   + +       D  F+A VI+WQK+HGRH LPWQNTRDAYRVWL
Sbjct: 1   MKRVVSDTRSKAIPSAQSPQVPAAALADLGFSADVISWQKKHGRHALPWQNTRDAYRVWL 60

Query: 57  SEIMLQQTQVAAVIPYYQRFLERCPDVFALASSPSEEVMALWSGLGYYTRARNLHKCAQR 116
           SEIMLQQTQVAAVIPYY RFLE  P V +LA++PSEEVMA WSGLGYY+RARNLHKCAQ 
Sbjct: 61  SEIMLQQTQVAAVIPYYLRFLETFPTVASLAAAPSEEVMAHWSGLGYYSRARNLHKCAQT 120

Query: 117 VVEQYGGRFPDDPALLAELPGIGRSTAAAIAAFSYGRRAAILDGNVKRVFARVFGIDGYP 176
           +V +YGG FP DP LL +LPGIGRSTAAAI+AFSYG RAAILDGNVKRVFARVFG++ YP
Sbjct: 121 IVAEYGGVFPSDPELLEQLPGIGRSTAAAISAFSYGTRAAILDGNVKRVFARVFGVERYP 180

Query: 177 GAKPIEDKLWLRAVALLPDEDIESYTQGLMDLGATLCVRGKPSCGRCPLAGRCVALAEDR 236
           G K +E++LWLRAVALLP+  +E+YTQGLMDLGATLC R  PSC RCPLA RCVA A  R
Sbjct: 181 GEKAVENELWLRAVALLPENGVEAYTQGLMDLGATLCTRNSPSCQRCPLAHRCVAYASGR 240

Query: 237 VGELPVSKPKKAVPEKETVMLVITQGADVLLEQRPDSGIWGGLLSLPEIGVSDA-VRFDS 295
             ELP+ KPKKAVPEK+T ML+I    +VLLEQRPD GIWGGLLSLPEI    A  +FD+
Sbjct: 241 TNELPIRKPKKAVPEKQTTMLLIVDKDEVLLEQRPDKGIWGGLLSLPEIAAESADAQFDA 300

Query: 296 AVRTLVAPYGELEGCRKLQPFSHVFTHFKLHVAPFQVALKSRTLHIAERGLVWYPTRKLA 355
            +   VA +G      +L  F+HVFTHFKLH+ P+ +AL  R     +   VWYP  K+A
Sbjct: 301 VMAQAVARFGVAASQERLSMFTHVFTHFKLHITPYHIALARRIERAGQDQYVWYPLAKMA 360

Query: 356 DAPLPAPVKKLLLGVLHSDDLL 377
           DAPLPAPVKKLLL V    DLL
Sbjct: 361 DAPLPAPVKKLLLAVFRVPDLL 382


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 894,163
Number of extensions: 37669
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 295
Effective length of database: 906,776
Effective search space: 267498920
Effective search space used: 267498920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)