BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3812.p
         (287 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980957|ref|YP_001354810.1| hypothetical protein mma_3120 [...   394   e-111

>gi|152980957|ref|YP_001354810.1| hypothetical protein mma_3120
           [Janthinobacterium sp. Marseille]
          Length = 287

 Score =  394 bits (1012), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/287 (67%), Positives = 225/287 (78%)

Query: 1   MRIVLITGISGSGKSVALHVLEDAGYFCVDNLPPSLLYELVQTRIKEGDHRLAVAIDARS 60
           MRI+LITGISGSGKSV L  LEDAGYFCVDNLPP+LL  LV TR +E   +LAVA+DARS
Sbjct: 1   MRIILITGISGSGKSVGLTSLEDAGYFCVDNLPPTLLRALVATRQEEHADKLAVAMDARS 60

Query: 61  ADYLETLRVDIAQLRADGHDVKAVFLTASNHTLITRFSETRRSHPLSHRLLPGRNPADQL 120
           A  L  L  DIA L++ GH+VK +FLTA   +LI RFSETRRSHPLSHR        D+ 
Sbjct: 61  ASSLIGLPADIAWLQSQGHEVKVLFLTAKTDSLIARFSETRRSHPLSHRGFSSTAAEDRR 120

Query: 121 TLTECIAIEKDMLGDLQDIGLVMDTSQLSSNKLRRWIKELVDLERSPLTLLIESFGFKHG 180
           TLTECI  E++ML  +++I  V+DTS +S+NKLR WIK L++ + SPLT+L ESF FK G
Sbjct: 121 TLTECIREEREMLSGVEEISHVIDTSGMSANKLRGWIKALIESDHSPLTVLFESFAFKFG 180

Query: 181 LPLDADLVFDVRMLPNPHYDAALRPLTGRDAPVIEFLAAYPEVADMFNDIRGFVEKWLPA 240
           +PLDADLVFDVRMLPNPHYD+ LRPLTGRDAPV  FL   P+   +  DIRGFVEKWLPA
Sbjct: 181 VPLDADLVFDVRMLPNPHYDSQLRPLTGRDAPVQAFLQDQPDATALLADIRGFVEKWLPA 240

Query: 241 FKNDNRSYLTVAIGCTGGQHRSVYLAEQLASHFRATEQVVCRHRQLN 287
           FK DNRSYLTVAIGCTGGQHRSVY+ EQLA+HFRA E V+ RHR+L+
Sbjct: 241 FKKDNRSYLTVAIGCTGGQHRSVYMVEQLAAHFRAHEHVILRHRELD 287


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 679,169
Number of extensions: 27925
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 205
Effective length of database: 917,867
Effective search space: 188162735
Effective search space used: 188162735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)