BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3810.p
         (157 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981794|ref|YP_001354808.1| PTS system, nitrogen regulatory...   258   1e-70
gi|152981786|ref|YP_001353490.1| PTS system, nitrogen regulatory...   125   2e-30

>gi|152981794|ref|YP_001354808.1| PTS system, nitrogen regulatory
           IIA component [Janthinobacterium sp. Marseille]
          Length = 157

 Score =  258 bits (659), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 123/156 (78%), Positives = 138/156 (88%)

Query: 1   MTNLAKILSPENVVLDLEVSSKKRAFEQAGLTFENNSGIARSTVSENLFARERLGSTGLG 60
           M +L++IL P NVVLDL+VSSKKR FEQ GL FENN GIARS VS+NLFARERLGSTGLG
Sbjct: 1   MNHLSQILPPANVVLDLDVSSKKRTFEQVGLIFENNCGIARSVVSDNLFARERLGSTGLG 60

Query: 61  HGVAVPHGRIKGLKSPLALFMRLAAPIPFESPDGQPVKLLVFLLIPDNVTQQHLEILSEI 120
           HGVAVPHGRIKGLK+PLA F+RLA PIPFESPDGQPV LL+FLLIPD+VTQQHLEILSE+
Sbjct: 61  HGVAVPHGRIKGLKAPLAAFVRLAQPIPFESPDGQPVNLLIFLLIPDHVTQQHLEILSEL 120

Query: 121 AEMFSDDAFRNELAIETDPAVVHARIVTWQSSMEKT 156
           AEMFSD+AFRN LA   DPA VHAR++TWQ S++ T
Sbjct: 121 AEMFSDEAFRNLLASTEDPAAVHARLITWQPSLQST 156


>gi|152981786|ref|YP_001353490.1| PTS system, nitrogen regulatory
           IIA component [Janthinobacterium sp. Marseille]
          Length = 153

 Score =  125 bits (313), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/142 (43%), Positives = 86/142 (60%)

Query: 1   MTNLAKILSPENVVLDLEVSSKKRAFEQAGLTFENNSGIARSTVSENLFARERLGSTGLG 60
           M   ++ L PEN+ LDL  ++K +AF       E N  I R+ V + L+ RE + STGLG
Sbjct: 1   MNTFSQYLLPENIFLDLRAANKLQAFALIAGLLERNCHINRALVYQKLYERENMDSTGLG 60

Query: 61  HGVAVPHGRIKGLKSPLALFMRLAAPIPFESPDGQPVKLLVFLLIPDNVTQQHLEILSEI 120
            GVA+PH ++ G+K P+A F+RL AP+ F +PD QPV  L  LL+P   T+ HL+IL+E+
Sbjct: 61  SGVAIPHAQVAGIKQPIAAFVRLHAPLDFSAPDEQPVSELFVLLLPVRTTRDHLQILAEL 120

Query: 121 AEMFSDDAFRNELAIETDPAVV 142
           A M  D  FR  L    D + V
Sbjct: 121 AGMLCDPQFRTGLGNAGDVSAV 142


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 350,485
Number of extensions: 13638
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 2
Length of query: 157
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 81
Effective length of database: 940,049
Effective search space: 76143969
Effective search space used: 76143969
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)