BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3807.p
         (508 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979956|ref|YP_001354806.1| threonine dehydratase [Janthino...   885   0.0  
gi|152980291|ref|YP_001354353.1| cysteine synthase [Janthinobact...    62   6e-11

>gi|152979956|ref|YP_001354806.1| threonine dehydratase
           [Janthinobacterium sp. Marseille]
          Length = 507

 Score =  885 bits (2288), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/507 (82%), Positives = 465/507 (91%)

Query: 1   MSNDYLKKILTARVYDVAQETPLELANTLSQRIDNRIYFKREDMQSVFSFKLRGAYNKMA 60
           M+ DYLKKILTARVYDVA E+PLELA TLSQR+ N+IYFKRED+QSVFSFKLRGAYNKMA
Sbjct: 1   MTTDYLKKILTARVYDVAVESPLELAPTLSQRVGNQIYFKREDIQSVFSFKLRGAYNKMA 60

Query: 61  HLTPAQLKRGVICASAGNHAQGVALSAARLGCRAVIVMPTTTPQVKIDAVKARGGEVVLF 120
           HL PAQ+KRGVICASAGNHAQGVALSA +LGCRAVIVMPTTTP VK++AV ARGGEVVLF
Sbjct: 61  HLPPAQMKRGVICASAGNHAQGVALSATKLGCRAVIVMPTTTPSVKVEAVNARGGEVVLF 120

Query: 121 GDSFTDAYEHALTLEKKQKLTFVHPFDDPYVIAGQGTVGMEILRQHPDPIHAIFVAIGGG 180
           GDS++DAY+HALTLEKK KLTFVHPFDDP VIAGQGT+GMEILRQH  PIHAIFV IGGG
Sbjct: 121 GDSYSDAYQHALTLEKKLKLTFVHPFDDPDVIAGQGTIGMEILRQHAGPIHAIFVPIGGG 180

Query: 181 GLIAGVASYVKAVRPDIKVIGVQTTDSDAMARSLKAGRRVALPDVGLFSDGTAVKLVGEE 240
           GLIAGVA+YVKAVRP+IKVIGVQT+DSDAMARSL+AGRRV + DVGLF+DGTAVKLVGEE
Sbjct: 181 GLIAGVAAYVKAVRPEIKVIGVQTSDSDAMARSLQAGRRVTMADVGLFADGTAVKLVGEE 240

Query: 241 TFRIAKELVDDVIIVDTDAVCTAIKDIFQDTRSIVEPAGALAVAGAKAYVERAKASKKPI 300
           TFR+AK+ VD++I+VDT+ VCTAIKD+FQDTRSI+EP+GALAVAGAKAY+ERA+ASKKP+
Sbjct: 241 TFRLAKQYVDEIIVVDTNEVCTAIKDVFQDTRSILEPSGALAVAGAKAYIERARASKKPL 300

Query: 301 KGESLITIACGANMNFDRLRFVAEMADAGEAREAVFAVTIPEERGSFRRFCETVGPRNVT 360
           K E+L+TIA GANMNFDRLRFVAEMAD G ARE VFAVTIPEERGSF+RFCE +GPRNVT
Sbjct: 301 KNETLVTIASGANMNFDRLRFVAEMADVGAAREGVFAVTIPEERGSFKRFCELIGPRNVT 360

Query: 361 EFNYRISDAKAAHVFVGIQVSAADEAGKIARNFEKAGFGVLDLTHDELAKVHIRHLVGGK 420
           EFNYRISDAK AH+FVG+Q++  DEAGKI + FEK GF  LDLTHDELAK HIRHLVGGK
Sbjct: 361 EFNYRISDAKLAHIFVGMQIADRDEAGKITKLFEKHGFKTLDLTHDELAKGHIRHLVGGK 420

Query: 421 SELAGDELLYRFEFPERPGALMKFLSSMNPGWNISLFHYRNQGGDVGRILIGLQVPKKEM 480
           SEL  DE+LYRFEFPERPGALM+FL S+ P WNISLFHYRNQGGDVGRIL+GLQVPKKEM
Sbjct: 421 SELTQDEILYRFEFPERPGALMRFLDSVAPNWNISLFHYRNQGGDVGRILVGLQVPKKEM 480

Query: 481 KELRAFLAQLGYRHWDETKNPLYKLFL 507
           K  RA LA LGYRHWDE+ NP+YKLFL
Sbjct: 481 KAFRASLAGLGYRHWDESDNPVYKLFL 507


>gi|152980291|ref|YP_001354353.1| cysteine synthase
           [Janthinobacterium sp. Marseille]
          Length = 300

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 94/209 (44%), Gaps = 28/209 (13%)

Query: 14  VYDVAQETPL----ELANTLSQRIDNRIYFKREDMQSVFSFKLRGAYNKMAHLTPAQLKR 69
           + D    TPL     L    + R +N I  K E      S K R A + + H      +R
Sbjct: 6   IEDTIGNTPLVQLKRLGGEDAVRRNNVILGKLEGNNPAGSVKDRPALSMILHAE----ER 61

Query: 70  GVIC-------ASAGNHAQGVALSAARLGCRAVIVMPTTTPQVKIDAVKARGGEVVLFGD 122
           GVI        A++GN    +A+ AA  G + V++MP    + +  A+ A G ++VL   
Sbjct: 62  GVIKPGDTLIEATSGNTGIALAMVAAMRGYKMVLLMPENLSEERRQAMAAYGAKIVL--T 119

Query: 123 SFTDAYEHALTL-EKKQKL-------TFVHPFDDPYVIAGQGTVGMEILRQHPDPIHAIF 174
             T   E+A  L E+ QK         F +P D+P   A   T G EI R     I    
Sbjct: 120 PKTGGMEYARDLAEQMQKNGEGLILDQFANP-DNPR--AHYETTGPEIWRDTGGQITHFV 176

Query: 175 VAIGGGGLIAGVASYVKAVRPDIKVIGVQ 203
            A+G  G I GV+ Y+K   PDIK+IGVQ
Sbjct: 177 SAMGTTGTIIGVSEYLKEKNPDIKIIGVQ 205


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,055,850
Number of extensions: 41345
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 2
Length of query: 508
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 421
Effective length of database: 899,382
Effective search space: 378639822
Effective search space used: 378639822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)