BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3806.p
         (163 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981895|ref|YP_001354805.1| hypothetical protein mma_3115 [...   251   1e-68

>gi|152981895|ref|YP_001354805.1| hypothetical protein mma_3115
           [Janthinobacterium sp. Marseille]
          Length = 162

 Score =  251 bits (642), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 122/160 (76%), Positives = 138/160 (86%)

Query: 1   MIESAVLWLLNILAIPTVGLTSVFLISFVSATLLPLGSEPAVFAVIKASPEMFWPVILVA 60
           MIESAV W+L  LA P VGL SVF+ISF+SATLLPLGSEPAVFAV+K++ ++FWP +LVA
Sbjct: 1   MIESAVQWVLVTLAAPEVGLLSVFIISFISATLLPLGSEPAVFAVVKSNIDLFWPALLVA 60

Query: 61  TVGNTLGGIVDYWMGYGAKQAFAKERSTRWFHWLERFGAKTMLLAWLPGIGDPICTLAGW 120
           T GNTLGG V+YWMG GAKQ FAKER TRWF WLERFGAKTMLLAWLPGIGDP+C LAGW
Sbjct: 61  TAGNTLGGAVNYWMGLGAKQVFAKERQTRWFGWLERFGAKTMLLAWLPGIGDPLCLLAGW 120

Query: 121 LRLPFWPSVVYMAIGKFIRYVLMTWLLLNVPDGFWHKLGD 160
           L+LPFWP V+YMAIGKF+RY+ MTWLLL +PDGFW  L  
Sbjct: 121 LKLPFWPCVLYMAIGKFLRYLTMTWLLLYIPDGFWQYLAK 160


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.328    0.143    0.496 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 437,411
Number of extensions: 18409
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 87
Effective length of database: 940,049
Effective search space: 81784263
Effective search space used: 81784263
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 126 (53.1 bits)