BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3805.p (1333 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981491|ref|YP_001354804.1| (S)-2-hydroxy-acid oxidase [Jan... 2380 0.0 gi|152979945|ref|YP_001352025.1| glycolate oxidase (fad-linked s... 95 3e-20 gi|152980854|ref|YP_001353872.1| FAD/FMN-containing dehydrogenas... 83 1e-16 >gi|152981491|ref|YP_001354804.1| (S)-2-hydroxy-acid oxidase [Janthinobacterium sp. Marseille] Length = 1332 Score = 2380 bits (6167), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1137/1333 (85%), Positives = 1236/1333 (92%), Gaps = 1/1333 (0%) Query: 1 MNAPAQIQALLTDAPHGAALPRLREIPYNYTSFSDREIVIRLLGESSWSLLDELRGKRQT 60 MNAP QIQ LL D P GA RLREIPYNYTSFSDREIVIRLLGE +W LLDELRG RQT Sbjct: 1 MNAPVQIQTLLADGPGGAVPTRLREIPYNYTSFSDREIVIRLLGEDAWRLLDELRGARQT 60 Query: 61 GRSARMLYEVLGDIWVVRRNPYLQDDLLDNPKRRAALIEALNHRINEVDKRRLATDSAEA 120 GRSARMLYEVLGDIWVV+RNPYLQDDLLDNPKRR ALI+AL+HR+ EV+KRR+ TD A + Sbjct: 61 GRSARMLYEVLGDIWVVQRNPYLQDDLLDNPKRRQALIDALHHRLVEVEKRRI-TDLAIS 119 Query: 121 GDADAQRRSASVEALLKAAKKAIGDFAEEFRQTYDLRRRATKVLGRYTARDNIKFDGLSR 180 D +A RR A+VEALLK+A+KA+ F EEFR+TYDLR+RA +VLGRYT +DNIKFDGLSR Sbjct: 120 TDENAVRRGAAVEALLKSARKAVTAFGEEFRRTYDLRKRANRVLGRYTEKDNIKFDGLSR 179 Query: 181 VSHVTDATDWRVEYPFVVLTPDTEDEMAGLVKACIELGLTIIPRGGGTGYTGGAIPLTPL 240 VSHVTDATDWRVEYPFVVLTPD+EDEMAGLVK CIELGLTIIPRGGGTGYTGGA+PLTP+ Sbjct: 180 VSHVTDATDWRVEYPFVVLTPDSEDEMAGLVKGCIELGLTIIPRGGGTGYTGGAVPLTPM 239 Query: 241 SAVINTEKLEQLGAVEMTMLPGVDKPYATIYSGAGVVTKRVSDAAEKAGFVFAVDPTSAE 300 SAVINTEKLE LGAVEMTMLPGVD+ YATIYSGAGVVTKRVSDAAEKAGFVFAVDPTSAE Sbjct: 240 SAVINTEKLEALGAVEMTMLPGVDREYATIYSGAGVVTKRVSDAAEKAGFVFAVDPTSAE 299 Query: 301 ASCIGGNVAMNAGGKKAVLWGTALDNLASWRMVDPQGDWLEVTRLDHNLGKIHDVEVARF 360 ASCIGGN+AMNAGGKKAVLWGTALDNLASWRMVDP GDWLEVTRL+HNLGKIHD VA+F Sbjct: 300 ASCIGGNIAMNAGGKKAVLWGTALDNLASWRMVDPNGDWLEVTRLEHNLGKIHDAPVAKF 359 Query: 361 KLEWSHPGEKGQKTEVFKTEILEISGKKFRKEGLGKDVTDKFLSGLPGVQKEGCDGLITS 420 KLEW+HP EKG+ + FK+E LEI+G+ FRKEGLGKDVTDKFLSGLPGVQKEGCDGLITS Sbjct: 360 KLEWTHPAEKGRVNQPFKSETLEIAGRTFRKEGLGKDVTDKFLSGLPGVQKEGCDGLITS 419 Query: 421 ARWILHKMPKQTRTVCLEFFGQARDAIPSIVEIKDYLDAETKKGGAILAGLEHLDERYLR 480 ARWILHKMPK TRTVCLEFFG +RDAIPSIVEIKD+LDAETKKGGAILAGLEHLDERYLR Sbjct: 420 ARWILHKMPKHTRTVCLEFFGHSRDAIPSIVEIKDFLDAETKKGGAILAGLEHLDERYLR 479 Query: 481 AVGYATKSKRGVLPKMVLIGDIVGDDENAVAAAASEVIRMANNRVGEGFVAVSPEARKKF 540 AVGYATKSKRG+LPKM L GDIVGDDENAVA AASEV+R+AN RVGEGFVAVSPEARKKF Sbjct: 480 AVGYATKSKRGILPKMALFGDIVGDDENAVAQAASEVVRLANTRVGEGFVAVSPEARKKF 539 Query: 541 WLDRSRTAAIAKHTNAFKINEDVVIPLNRMGEYTDGIERINIELSIKNKLQLLAELDSFF 600 WLDR+RTAAI+KHTNAFKINEDVVIPL+RMGEY+DGIERIN+ELSI+NKLQLL EL +FF Sbjct: 540 WLDRARTAAISKHTNAFKINEDVVIPLDRMGEYSDGIERINVELSIRNKLQLLEELHTFF 599 Query: 601 VKGNLPLGKSDDAEGDDIPAAEMLEDRVHQAESLLEQTHARWSYLLANLDKPLGEAKGEL 660 KGNLPLGKSDDAEGDDIPAAE+LEDRVHQAE L+ +ARW+Y+L NLD+PL AK EL Sbjct: 600 AKGNLPLGKSDDAEGDDIPAAELLEDRVHQAEDLIAAANARWTYMLDNLDQPLRAAKDEL 659 Query: 661 AALGLEKMLPVFEQRLIDQPEAAVFHVVQDRTVRISWKQEVRAQLRQIFSGAAFKPILEE 720 LGLEK+LPVFE+RLI QP+A +F V+QDRT+R+SWK E+RA LRQIFSGA+F+ ILEE Sbjct: 660 NLLGLEKLLPVFEERLIVQPDATLFDVIQDRTIRVSWKTEIRAPLRQIFSGASFRLILEE 719 Query: 721 CQAIHKRVLRGRVFVALHMHAGDGNVHTNIPVNSDHYDMLQDAHVAVARIMKLARSLNGV 780 AIHKRVLRGRVFVALHMHAGDGNVHTNIPVNSDHY MLQDAH AVARIM LARSLNGV Sbjct: 720 ATAIHKRVLRGRVFVALHMHAGDGNVHTNIPVNSDHYQMLQDAHAAVARIMALARSLNGV 779 Query: 781 ISGEHGIGITKLEFLTEDEIGEFREYKKRVDPEGRFNKGKLLNLPGMEADLSNAYTPSFG 840 ISGEHGIGITKLEFLT+ E+ +FR YK+R+DPEGRFNKGKL+++ + ADL NAYTPSFG Sbjct: 780 ISGEHGIGITKLEFLTDAELADFRSYKRRIDPEGRFNKGKLMDMSELSADLRNAYTPSFG 839 Query: 841 LMGHESLIMQQSDIGAIASSVKDCLRCGKCKPVCSTHVPRANLLYSPRNKILATSLLVEA 900 LMGHESLIMQQSDIGAIA+SVKDCLRCGKCKPVC+THVPRANLLYSPRNKILATSLLVEA Sbjct: 840 LMGHESLIMQQSDIGAIANSVKDCLRCGKCKPVCATHVPRANLLYSPRNKILATSLLVEA 899 Query: 901 FLYEEQTRRGVSIKHWEEFEDVADHCTVCHKCVTPCPVDIDFGDVSMNMRNLLRKMGKKS 960 FLYEEQTRRG+SIKHWEEFEDVADHCTVCHKC+TPCPVDIDFGDVSMNMRNLLRKM KKS Sbjct: 900 FLYEEQTRRGISIKHWEEFEDVADHCTVCHKCLTPCPVDIDFGDVSMNMRNLLRKMNKKS 959 Query: 961 FNAGTNAAMFFLNATDPATINATRKVMTQWGFKAQRLGNDLMKKFAKKQTQKPPATVGKP 1020 FN GT A+MFFLNATDPATINATR+VM WG+KAQR G+D++KK AKKQT P ATVGKP Sbjct: 960 FNPGTAASMFFLNATDPATINATRQVMIGWGYKAQRFGHDVLKKLAKKQTSAPRATVGKP 1019 Query: 1021 PVKEQVIHFINKKMPGNLPKKTARALLDIEDDKIVPIIRNPKTTTADTEAVFYFPGCGSE 1080 P+KEQVIHFINKKMPGNLPKKTARALLDIEDDK+VPIIR+PKTTT DTEAVFYFPGCGSE Sbjct: 1020 PIKEQVIHFINKKMPGNLPKKTARALLDIEDDKVVPIIRDPKTTTMDTEAVFYFPGCGSE 1079 Query: 1081 RLFSQVGLATQAMLWNVGVQTVLPPGYLCCGYPQRGTGDFEKGEKIITDNRVLFHRMANT 1140 RLFSQVGLATQAMLWNVGVQTVLPPGYLCCGYPQRG+G+++K EKIITDNRVLFHRMANT Sbjct: 1080 RLFSQVGLATQAMLWNVGVQTVLPPGYLCCGYPQRGSGNYDKAEKIITDNRVLFHRMANT 1139 Query: 1141 LNYLDIKTVVVSCGTCYDQLQGYEFEKIFPGCRIIDIHEYLLEKGVKLEGVTGTRYMYHD 1200 LNYLDIKTV+VSCGTCYDQLQGYEFEKIFPGCRI+DIHEYL+EKGVKLEGV G RYMYHD Sbjct: 1140 LNYLDIKTVIVSCGTCYDQLQGYEFEKIFPGCRIVDIHEYLMEKGVKLEGVNGVRYMYHD 1199 Query: 1201 PCHSPMKQQDPLKTVNSLITTVDAQKIEKNDRCCGESGTFGVSRPDVSTQVRFRKEEEMK 1260 PCHSPMK QDPLKTVN+LITTVD QKIEKNDRCCGESGT V+RPD+STQVRFRKEEEM Sbjct: 1200 PCHSPMKLQDPLKTVNALITTVDDQKIEKNDRCCGESGTLAVTRPDISTQVRFRKEEEMT 1259 Query: 1261 KGSDKVRADGFAGDVKILTSCPSCFQGLSRYNDDAGTTADYIVVEMARHLLGENWMPEYV 1320 KG+DK+R+DGF GDVKILTSCPSC QGLSRYN+D+ TTADYIVVEMA+HLLG NW+PEYV Sbjct: 1260 KGADKLRSDGFTGDVKILTSCPSCLQGLSRYNEDSDTTADYIVVEMAKHLLGPNWLPEYV 1319 Query: 1321 ERANNGGIERILV 1333 +RANNGGIER+LV Sbjct: 1320 DRANNGGIERVLV 1332 >gi|152979945|ref|YP_001352025.1| glycolate oxidase (fad-linked subunit) oxidoreductase protein [Janthinobacterium sp. Marseille] Length = 495 Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 98/408 (24%), Positives = 166/408 (40%), Gaps = 80/408 (19%) Query: 186 DATDWRVEYPFVVLTPDTEDEMAGLVKACIELGLTIIPRGGGTGYTGGAIPLTPLSAVIN 245 D + P VV+ PDTE+++ +K C L + I+PRG GTG +GGA+P+ V++ Sbjct: 43 DGLAAYAQLPMVVVLPDTEEQVIAALKVCNALKVPIVPRGAGTGLSGGALPIAD-GIVLS 101 Query: 246 TEKLEQLGAVEMTMLPGVDKPYATIYSGAGVVTKRVSDAAEKAGFVFAVDPTSAEASCIG 305 T +L ++ V+ V +P GV +S+A G +A DP+S A IG Sbjct: 102 TARLNKIVKVDAYARTAVVQP--------GVRNLAISEAVAPLGLYYAPDPSSQIACTIG 153 Query: 306 GNVAMNAGGKKAVLWGTALDNLASWRMVDPQGDWLEVTRLDHNLGKIHDVEVARFKLEWS 365 GNVA N+GG + +G + N+ R+V +GD Sbjct: 154 GNVAENSGGVHCLKYGLTVHNVMRVRVVTIEGD--------------------------- 186 Query: 366 HPGEKGQKTEVFKTEILEISGKKFRKEGLGKDVTDKFLSGLPGVQKEGCDGLITSARWIL 425 ++E+ GL D+ F+ EG G++T L Sbjct: 187 ---------------VIELGNAALDAPGL--DLLSVFIG------SEGMLGMVTEVTVKL 223 Query: 426 HKMPKQTRTVCLEF--FGQARDAIPSIVEIKDYLDAETKKGGAILAGLEHLDERYLRAVG 483 PK R + F + +A+ S++ G I AGLE +D+ R V Sbjct: 224 IPKPKLARVILASFDDVVKGGNAVASVI-----------AAGIIPAGLEMMDKTSSRMVE 272 Query: 484 YATKSKRGVLPKMVLI--GDIVGDDENAVAAAASEVIRMANNRVGEGFVAVSPE--ARKK 539 K+ + + +L+ D + ++ + A +EV++ + G +AVS R + Sbjct: 273 PFVKAGYDIDAEAILLCESDGIPEEVDEEIARMTEVLKHS----GATAIAVSQNEAERLR 328 Query: 540 FWLDRSRTAAIAKHTNAFKINEDVVIPLNRMGEYTDGIERINIELSIK 587 FW R A + D IP + + GI ++ ++ ++ Sbjct: 329 FWSGRKNAFPAAGRISPDYYCIDGTIPRRSLADVLLGIAQMEVKYGLR 376 >gi|152980854|ref|YP_001353872.1| FAD/FMN-containing dehydrogenase [Janthinobacterium sp. Marseille] Length = 468 Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 100/397 (25%), Positives = 148/397 (37%), Gaps = 78/397 (19%) Query: 188 TDWRVEY---PFVVLTPDTEDEMAGLVKACIELGLTIIPRGGGTGYTGGAIPLTPLSAVI 244 TDWR + VL P E+A LV+ C E + ++P+GG TG G IP +A I Sbjct: 29 TDWRRRFTGKARAVLKPADTQELATLVRLCNEYKVPMVPQGGNTGLVLGGIPDESGTAAI 88 Query: 245 NTEKLEQLGAVEMTMLPGVDKPYATIYSGAGVVTKRVSDAAEKAGFVFAVDPTSAEASC- 303 L + + VD T+ AG + K + AA AG +F + +AE SC Sbjct: 89 -------LSLTRLNRIRHVDPLNNTVTVEAGCILKNIQAAASDAGRLFPLS-LAAEGSCT 140 Query: 304 IGGNVAMNAGGKKAVLWGTALDNLASWRMVDPQGD-WLEVTRLDHNLGKIHDVEVARFKL 362 IGGN++ NAGG + +G + +V PQGD W H L Sbjct: 141 IGGNLSTNAGGTAVLRYGNTRELCLGLEVVTPQGDIW-------HGL------------- 180 Query: 363 EWSHPGEKGQKTEVFKTEILEISGKKFRKEGLGKDVTDKFLSGLPGVQKEGCDGLITSAR 422 + RK+ G D+ D ++ EG G IT+A Sbjct: 181 ------------------------RGLRKDNTGYDLRDLYIGA------EGTLGFITAAV 210 Query: 423 WILHKMPKQTRTVCLEFFGQARDAIPSIVEIKDYLDAETKKGGAILAGLEHLDERYLRAV 482 L P+ T L DA+ + + Y + L G E + LR V Sbjct: 211 LKLFPQPRAQLT-ALAALRTPDDALRLLSLAQSYCVSA-------LTGFELMSGFCLRLV 262 Query: 483 GYATKSKRGVL----PKMVLIGDIVGDDENAVAAAASEVIR--MANNRVGEGFVAVSPEA 536 R P+ VL+ + E VI M + + + VA S Sbjct: 263 NRHFPDMRLPFAEEHPQYVLLELSDSESEEHAQTMLEHVISTAMQQDLIQDAIVARSLAQ 322 Query: 537 RKKFWLDRSRTAAIAKHTNAFKINEDVVIPLNRMGEY 573 K W D +A+ I DV +P++R+ ++ Sbjct: 323 SKAIW-DIREHIPLAQAAEGKNIKHDVSLPISRIADF 358 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 3,109,865 Number of extensions: 131781 Number of successful extensions: 371 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 371 Number of HSP's successfully gapped: 3 Length of query: 1333 Length of database: 1,221,021 Length adjustment: 95 Effective length of query: 1238 Effective length of database: 869,806 Effective search space: 1076819828 Effective search space used: 1076819828 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)