BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3801.p
         (321 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981843|ref|YP_001354800.1| hypothetical protein mma_3110 [...   267   6e-73

>gi|152981843|ref|YP_001354800.1| hypothetical protein mma_3110
           [Janthinobacterium sp. Marseille]
          Length = 307

 Score =  267 bits (683), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 161/321 (50%), Positives = 210/321 (65%), Gaps = 15/321 (4%)

Query: 1   MKKILLALLLAMTSLSLIMSPAEAKRLGGGGSFGKQSSNYSRQAAPSAPSSPSYSQPAAT 60
           MKK+LLA+ + ++S++ I   AEAKR+GGGGSFGKQS ++ R A       P+ S  A  
Sbjct: 1   MKKLLLAVAVMVSSMTFIAVEAEAKRMGGGGSFGKQSQSFQRPA-------PAQSSSANA 53

Query: 61  PYRPSAPTATPQSAPMSRPASPWRNMLGGALLGFGLGALMSHFGIGGAMGGMLGSLLTIL 120
               +AP A    A  +   S  RN+LGGALLG GLGAL+SH GIGGA   M+ ++L + 
Sbjct: 54  SKPAAAPAAAGAGAAAAAKPSMMRNILGGALLGLGLGALLSHLGIGGAFASMISTILMVA 113

Query: 121 LLCVAVIFLVRLFARGRQAQSNNPAYATPMPGVSPIGSAAGATPEIGSGLRDINPPPAAL 180
           LL  A +F+ R+        +  P++A          SA  +TP+IGSGL      P+AL
Sbjct: 114 LLGFAAMFIYRMIKNKSAGNNAQPSFANGY-------SAKNSTPDIGSGLNQQYQQPSAL 166

Query: 181 PGAGYAASAQPAQIQHWGIPEGFDTAGFVRNAKTYFIRLQAAWDRADVNDIREFTTPEMF 240
             A   AS    +  +  +P  FD   F+RNAKTYFIRLQAAWD+AD+NDIREFTTPEMF
Sbjct: 167 QSAAPMASGAAYEAVN-ELPADFDVESFIRNAKTYFIRLQAAWDKADINDIREFTTPEMF 225

Query: 241 AELRMQLTERGAAPNATDVVQLDAELLGIETMAFDYLATVRFQGLIKEAPDVSAEPFAEI 300
           AEL++QL ERGA PN TDVV L+ E  G+ET+  DY+A+++F G+I+EA     EPF+E 
Sbjct: 226 AELKLQLQERGATPNVTDVVTLNGEFYGVETVGNDYIASIKFTGMIREADHAPTEPFSEA 285

Query: 301 WNLSKPLNGSGGWVLAGIQQI 321
           WNLSKP+NG+GGWVLAGIQQ+
Sbjct: 286 WNLSKPVNGNGGWVLAGIQQL 306


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 557,454
Number of extensions: 18519
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 238
Effective length of database: 914,170
Effective search space: 217572460
Effective search space used: 217572460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)