BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3800.p
         (202 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981831|ref|YP_001354799.1| hypothetical protein mma_3109 [...   244   4e-66

>gi|152981831|ref|YP_001354799.1| hypothetical protein mma_3109
           [Janthinobacterium sp. Marseille]
          Length = 196

 Score =  244 bits (622), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 118/190 (62%), Positives = 147/190 (77%)

Query: 11  ALDPMKPAAAVINHLLAQEPWARSTLMAHAGKVACIDTGVMPLRLKVSGDGYLQEVPADA 70
           +L P     A INHLLAQE WAR+ L+ HAGKVA +D GV+ +RLKVS DG ++   AD 
Sbjct: 3   SLSPANIFPAAINHLLAQEAWARAKLLPHAGKVAVLDGGVLAVRLKVSADGMVETAAADD 62

Query: 71  PANVTIRLKLSDLPLIAANRERAVSYVKLEGDADFANAISQLSQKLRWDAEDDLSRVVGD 130
              VTIR+++SDLPLI  NRERA SYVK+EGDADFAN ISQLSQ LRW+AEDDLS+VVGD
Sbjct: 63  LPTVTIRMQMSDLPLIMQNRERAFSYVKIEGDADFANTISQLSQSLRWEAEDDLSKVVGD 122

Query: 131 VAAIRIVAGARELFDAARNTGRKLSENLAEYFLEEQPMLIRPRQLQDFSADVVRLRDDLE 190
           +AA RIVAGA    + A+   + ++EN+AEYFLEE P+LIRP+ +  F+A+V RLRDD+ 
Sbjct: 123 IAATRIVAGAHSAVNTAKALHQSVTENIAEYFLEENPLLIRPQAVAGFTAEVTRLRDDVA 182

Query: 191 RLSKRIEKLE 200
           RL+KRIEKL+
Sbjct: 183 RLAKRIEKLK 192


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 458,799
Number of extensions: 18399
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 123
Effective length of database: 928,958
Effective search space: 114261834
Effective search space used: 114261834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)