BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3798.p (485 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980367|ref|YP_001352036.1| major facilitator superfamily d... 301 9e-83 gi|152982589|ref|YP_001352814.1| major facilitator superfamily m... 110 3e-25 gi|152982526|ref|YP_001355122.1| major facilitator superfamily d... 106 3e-24 gi|152982562|ref|YP_001352191.1| major facilitator superfamily d... 92 5e-20 gi|152982183|ref|YP_001354785.1| major facilitator transporter [... 70 4e-13 >gi|152980367|ref|YP_001352036.1| major facilitator superfamily drug efflux transporter [Janthinobacterium sp. Marseille] Length = 478 Score = 301 bits (770), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 192/473 (40%), Positives = 288/473 (60%), Gaps = 10/473 (2%) Query: 4 NDNSLSDARV-RMLPYIVAATFFMEYLDTTIIATALPEMAKTFGVGPNELSLGMTAYMLT 62 N N+ +A+V R LP++VA FME LD+TII TA+P MA + V P L +++Y+L Sbjct: 7 NANATDEAKVKRYLPWVVAIALFMEQLDSTIINTAIPSMAASLHVTPLSLKAVVSSYILA 66 Query: 63 LAVFIPISGWVADRFGSRTVFGLAIAIFTFASILCGLSQNVWEFTAARVLQGLGGAMMVP 122 LAV IPISGW+ADRFG+R VF +A+ +FTF+SILCGLS NV AAR+LQG AMM+P Sbjct: 67 LAVSIPISGWMADRFGTRRVFSVAVGLFTFSSILCGLSVNVPMLVAARILQGFSAAMMMP 126 Query: 123 VGRMIVVRSTSKERLMKAIATITWPAIAAPVVGPSIGGFITTYASWHWIFLMNVPFGIAA 182 VGR+ V+R+ K L+ A+ + PA+ P++GP++GG I + W IF +NVP G+AA Sbjct: 127 VGRLTVIRTFPKSELLAAMNFVIIPALIGPLLGPTVGGLIVHWLPWQAIFFVNVPIGLAA 186 Query: 183 FGAVMLVVRNEHGQGKRPLDVIGFLLSGSALTSLLYGTEI-ASHMESNVKVALGFVVLGI 241 + + + RPLDVIG +L GS + L + EI H + F++ Sbjct: 187 QWMIHRHMPDYRSDSPRPLDVIGLVLFGSGVALLSWILEIFGEHYLDATSTTILFIISLA 246 Query: 242 VLGWCAWWHMRRIEHPLLDFSNLRIPTYSVTVFTGSLTRIGVDAVPYLMPLMFQIGFGLT 301 +LG H RR HPLL + + T+ V+V G +TR+GV +P+L+PL++Q+G GL Sbjct: 247 LLG-AYILHARRTLHPLLQLTLFKTRTFRVSVVGGFITRLGVGGLPFLLPLLYQLGLGLP 305 Query: 302 AFQSGLLLLATALGNLGMKAFTTRILQRFGFRSVALNNAAIAGCLIIVCGLLRPGTPLPV 361 A+QSGL+++ TA + MK + R+L FG+R V + N + G I + ++ P TP+ V Sbjct: 306 AWQSGLMMMPTAAAAMAMKLISVRVLGHFGYRKVLIVNTVMIGVTISLFSIITPSTPIAV 365 Query: 362 ILGVIFCYGLSRSMQFSTLATLAYADISDARKSSASTLWSVAQQMTIGMGIAFGALALRI 421 IL + G S+QFS++ ++AY+DI+ S AST+ S QQM++ G+AFG++ I Sbjct: 366 ILLLGLAQGFFNSLQFSSMNSMAYSDINPEDSSMASTIASSMQQMSMSFGLAFGSI---I 422 Query: 422 AAWLRGEVVGAVDASGAHFTLGDFQWAFAMAGVVTLMSVLGYRGLAPDAGSNI 474 AAW G++ + A+ + AF G +T++S L + L P+ G ++ Sbjct: 423 AAWYLGDLPQSDRAAVGN----ALHHAFLTLGGLTIISSLSFWALRPNDGESV 471 >gi|152982589|ref|YP_001352814.1| major facilitator superfamily multidrug resistance B translocase [Janthinobacterium sp. Marseille] Length = 517 Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/317 (26%), Positives = 154/317 (48%), Gaps = 8/317 (2%) Query: 25 FMEYLDTTIIATALPEMAKTFGVGPNELSLGMTAYMLTLAVFIPISGWVADRFGSRTVFG 84 FM LD++I ++P ++ GV P + + +T++ + A+ +P++GW+ R G +F Sbjct: 29 FMNVLDSSIANVSIPAISGDLGVSPQQGTWVITSFSVANAISVPLTGWLTQRIGQVRLFI 88 Query: 85 LAIAIFTFASILCGLSQNVWEFTAARVLQGLGGAMMVPVGRMIVVRSTSKERLMKAIATI 144 +I +F AS LCG + ++ AARVLQG M+P+ + +++ S + A+A Sbjct: 89 GSILLFVLASCLCGFAPSIEILIAARVLQGAVAGPMIPLSQALLLSSYPPAKSGMALAFW 148 Query: 145 TWPAIAAPVVGPSIGGFITTYASWHWIFLMNVPFGI-AAFGAVMLVVRNEHGQGKRPLDV 203 + AP++GP +GG+I+ +W WIF +N+P G+ AA+ + E K P+D Sbjct: 149 GMTTLVAPIMGPLLGGWISDNYTWPWIFFINIPIGLFAAWATWSIYKERESRTYKLPIDK 208 Query: 204 IGFLLSGSALTSLLY----GTEIASHMESNVKVALGFVVLGIVLGWCAWWHMRRIEHPLL 259 +G +L + SL G E+ + + V+ + + W + EHP++ Sbjct: 209 VGLVLLVLWVGSLQLMLDKGKELDWFHSGEIIILASVAVVAFI--YFVIWEIGE-EHPVV 265 Query: 260 DFSNLRIPTYSVTVFTGSLTRIGVDAVPYLMPLMFQIGFGLTAFQSGLLLLATALGNLGM 319 D S + +S V S+ ++PL Q G TA ++G ++ + + + Sbjct: 266 DLSLFKGRNFSGGVIAISVAYGLFFGSLVILPLWLQTQIGYTATEAGKVMAPVGIFAIIL 325 Query: 320 KAFTTRILQRFGFRSVA 336 ++L + R VA Sbjct: 326 SPIVGKMLPKIDARWVA 342 >gi|152982526|ref|YP_001355122.1| major facilitator superfamily drug efflux transporter [Janthinobacterium sp. Marseille] Length = 481 Score = 106 bits (264), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 140/286 (48%), Gaps = 8/286 (2%) Query: 29 LDTTIIATALPEMAKTFGVGPNELSLGMTAYMLTLAVFIPISGWVADRFGSRTVFGLAIA 88 L +TI+ A+P++++ F +G T +ML + + + ++ W+ RFG R +G AI Sbjct: 34 LSSTIVNVAIPDLSRYFVLGQERAQWVSTGFMLAMTLSMLLTPWLLLRFGLRRTYGGAIC 93 Query: 89 IFTFASILCGLSQNVWEFTAARVLQGLGGAMMVPVGRMIVVRSTSKERLMKAIATITWPA 148 + ++ G S N + RVL+GL +M P+ ++++R+ + KA+ + Sbjct: 94 LLLIGGVVGGFSINYPMLLSMRVLEGLASGVMQPIPAIVILRAFDQHEQGKAMGIFGFGV 153 Query: 149 IAAPVVGPSIGGFITTYASWHWIFLMNVPFGIAAFGAVM--LVVRNEHGQGKRPLDVIGF 206 + AP VGPS+GGF+ W IF + VP + + L +PLD G Sbjct: 154 VLAPAVGPSVGGFLVELFGWRSIFFVVVPPCLVVLVLIQRFLASYTPVPDSDKPLDWKGL 213 Query: 207 LLSGSALTSLLYGTEIASHMESNVKVALGFVVLGI--VLGWCAWWHMRRIEHPLLDFSNL 264 LL G ++ SLL G + ++ A+ +V+G+ ++G+ + R PL++ Sbjct: 214 LLIGVSIVSLLNGV---VELRGDMPQAVVLLVIGVATLIGFI-LYQTRTSAEPLMNMQLF 269 Query: 265 RIPTYSVTVFTGSLTRIGVDAVPYLMPLMFQIGFGLTAFQSGLLLL 310 R +++ + +G+ YL+P+ Q+G Q+GL+LL Sbjct: 270 RHRQFAMGALVAFIYGMGLFGSTYLLPIYMQMGMNYAPSQAGLVLL 315 >gi|152982562|ref|YP_001352191.1| major facilitator superfamily drug efflux transporter [Janthinobacterium sp. Marseille] Length = 518 Score = 92.4 bits (228), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 76/315 (24%), Positives = 139/315 (44%), Gaps = 3/315 (0%) Query: 19 IVAATFFMEYLDTTIIATALPEMAKTFGVGPNELSLGMTAYMLTLAVFIPISGWVADRFG 78 IV+ + +D T++ ALP + + + Y LT++ + G + DR G Sbjct: 26 IVSVALLLIVVDMTVLYAALPRLTADLTASASAKLWIVNIYALTVSGLLLGMGTLGDRLG 85 Query: 79 SRTVFGLAIAIFTFASILCGLSQNVWEFTAARVLQGLGGAMMVPVGRMIVVRSTSKERLM 138 +++F + +F AS+ S + A+R L +G AMM+P + ++R + Sbjct: 86 HKSLFIAGLVVFGIASLCAAYSPSSATLIASRALLAVGAAMMMP-ATLSIIRLAFADENE 144 Query: 139 KAIATITWPAIA--APVVGPSIGGFITTYASWHWIFLMNVPFGIAAFGAVMLVVRNEHGQ 196 +A+A W ++A +GP +GG + Y W +FL+NVP + A + + Sbjct: 145 RAVAIGIWASVAFGGAALGPVVGGLLLEYFWWGSVFLINVPIVLVALPIALAYIPKGKAN 204 Query: 197 GKRPLDVIGFLLSGSALTSLLYGTEIASHMESNVKVALGFVVLGIVLGWCAWWHMRRIEH 256 RP D+IG L + L + Y + A E +AL +++GI + H Sbjct: 205 KTRPWDLIGSLQIMAGLVGVTYALKEAGKREPAWGIALLVLLVGIFFLAVFARRQQHSAH 264 Query: 257 PLLDFSNLRIPTYSVTVFTGSLTRIGVDAVPYLMPLMFQIGFGLTAFQSGLLLLATALGN 316 P++DFS + +S +V + + + + Q+ +T Q+G+ +L +L Sbjct: 265 PMIDFSLFKNTIFSSSVAAAVVAAAALLGMELVFTQRLQLVLDMTPLQAGVFILPLSLAA 324 Query: 317 LGMKAFTTRILQRFG 331 T R+L R G Sbjct: 325 FVAGPLTGRVLPRLG 339 >gi|152982183|ref|YP_001354785.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 469 Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 126/292 (43%), Gaps = 18/292 (6%) Query: 26 MEYLDTTIIATALPEMAKTFGVGPNELSLGMTAYMLTL-AVFIPISGWVADRFGSRTVFG 84 M LDT I TALP MA P + + Y L + A +P + + + G R + Sbjct: 42 MASLDTAIANTALPAMAMQLNATPADSVWIVNIYQLAMVATLLPFAA-LGEILGYRRIAI 100 Query: 85 LAIAIFTFASILCGLSQNVWEFTAARVLQGLGGAMMVPVGRMIVVRSTSKERLM-KAIAT 143 + +FT AS+ C + ++ AR QG+G + ++ V ++ RS R++ + + T Sbjct: 101 FGLLLFTAASLACAYAWSLPTLVIARFFQGVGASAIMGVNTALL-RSIYPARMLGRGLGT 159 Query: 144 ITWPAIAAPVVGPSIGGFITTYASWHWIFLMNVPFGIAAFGAVMLVVRNEHGQGKRPLDV 203 A VGP+ I + SW W+F +NVP G+ A+ V+ + + D Sbjct: 160 NALVVAVAFAVGPTTASLILSVWSWPWLFAINVPLGLFAYFLARKVLPHTK-RATHKFDA 218 Query: 204 IGFLLSGSALTSLLYGTEIASHMESNVKVAL---GFVVLGIVLGWCAWWHMRRIE---HP 257 + + + L+ +H+ VAL G +V I+L +RR + P Sbjct: 219 LTAIYNAGGFGLLILAIGEGAHLSDAKTVALELFGALVFFILL-------LRRQKGHAAP 271 Query: 258 LLDFSNLRIPTYSVTVFTGSLTRIGVDAVPYLMPLMFQIGFGLTAFQSGLLL 309 +L R P ++++ T T +P F+ G +A ++G L+ Sbjct: 272 MLPVDLFRRPLFTLSALTAVCTFAAQSLAFVSLPFYFETVLGRSAIETGFLI 323 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.327 0.139 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,086,435 Number of extensions: 44706 Number of successful extensions: 277 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 269 Number of HSP's successfully gapped: 11 Length of query: 485 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 398 Effective length of database: 899,382 Effective search space: 357954036 Effective search space used: 357954036 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)