BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3797.p
         (266 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980361|ref|YP_001351922.1| indole-3-glycerol-phosphate syn...   441   e-125

>gi|152980361|ref|YP_001351922.1| indole-3-glycerol-phosphate
           synthase [Janthinobacterium sp. Marseille]
          Length = 266

 Score =  441 bits (1135), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/265 (80%), Positives = 239/265 (90%)

Query: 1   MSDILNKILAVKAEEIRIAQKQRDLASLRRDVESDSELRSELRNFEQGLRNKIAAGQAGV 60
           MSDILNKIL VKA+E+  A+K R LASLR +VE + E R+ +R FE  LR KIAAGQAG+
Sbjct: 1   MSDILNKILDVKADEVAAAKKYRSLASLRDEVEGNKEARAAIRGFEASLRAKIAAGQAGI 60

Query: 61  IAEVKKASPSKGVIRPDFKPAEIAVSYAEHGAACLSVLTDEQFFQGSPEYLKQARAACAL 120
           IAE+KKASPSKGVIRPDF PA+IAVSY ++GAACLSVLTD QFFQG+PEYLKQAR ACAL
Sbjct: 61  IAEIKKASPSKGVIRPDFHPADIAVSYEKNGAACLSVLTDVQFFQGAPEYLKQARTACAL 120

Query: 121 PALRKDFMMDPYQIYQARSWGADAILLIVAALDHGLMADLEACAHELGMSVLVEVHDSAE 180
           PALRKDFM+DPYQ+Y+ARSWGAD ILLIVAALDHGLMA+LEACAHELGM+VLVEVH++ E
Sbjct: 121 PALRKDFMIDPYQLYEARSWGADCILLIVAALDHGLMAELEACAHELGMNVLVEVHNAEE 180

Query: 181 LDAALKLKTRLLGINNRNLRTFETTLDTTLNLLPRIPPEKLVVTESAIATPDDVKRMRDA 240
           L AALKLKT LLG+NNRNLRTFET+L TTL+LLPRI P+KLV+TESAI TPDDVK+MRDA
Sbjct: 181 LTAALKLKTSLLGVNNRNLRTFETSLQTTLDLLPRISPDKLVITESAIVTPDDVKKMRDA 240

Query: 241 DVHAFLVGEAFMRAPEPGVELARLF 265
           DVHAFLVGEAFMRAP+PGVEL RLF
Sbjct: 241 DVHAFLVGEAFMRAPDPGVELGRLF 265


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 550,845
Number of extensions: 20411
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 184
Effective length of database: 917,867
Effective search space: 168887528
Effective search space used: 168887528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)