BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3792.p
         (221 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980493|ref|YP_001351927.1| D-ribulose-5-phosphate 3-epimer...   406   e-115

>gi|152980493|ref|YP_001351927.1| D-ribulose-5-phosphate 3-epimerase
           [Janthinobacterium sp. Marseille]
          Length = 221

 Score =  406 bits (1043), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/221 (89%), Positives = 211/221 (95%)

Query: 1   MPTYRIAPSILSADFARLGEEVRNVVAAGADFIHFDVMDNHYVPNLTIGPLVCEAIRPHV 60
           MP YRIAPSILSADFARLGEEV NVVAAGAD IHFDVMDNHYVPNLTIGPLVCEAIRPHV
Sbjct: 1   MPNYRIAPSILSADFARLGEEVCNVVAAGADIIHFDVMDNHYVPNLTIGPLVCEAIRPHV 60

Query: 61  QVPIDVHLMVKPVDRIIPDFAKAGANLITFHPEASEHIDRSLQLIRDNGCKAGLVFNPGT 120
           QVPIDVHLMVKPVDRIIPDFAKAGAN+ITFHPEASEHIDR+LQLIRDNGCKAGLVFNP T
Sbjct: 61  QVPIDVHLMVKPVDRIIPDFAKAGANIITFHPEASEHIDRTLQLIRDNGCKAGLVFNPAT 120

Query: 121 PLHYLDHVMDKLDMVLIMSVNPGFGGQSFIPEALKKIAEVRRRIDASGRDILLEVDGGIK 180
           PL++L+HVMDKLD++L+MSVNPGFGGQSFIP  LKKIA VR+ ID SGRDI+LEVDGGIK
Sbjct: 121 PLNHLEHVMDKLDIILMMSVNPGFGGQSFIPHTLKKIAAVRKMIDESGRDIMLEVDGGIK 180

Query: 181 VENIAAAARAGADTFVAGSAIFGKPDYKAVIDAMRAELAQV 221
           ++NI AAARAGADTFVAGSAIFGKPDYKAVIDAMR+ELA+V
Sbjct: 181 IDNIEAAARAGADTFVAGSAIFGKPDYKAVIDAMRSELAKV 221


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.141    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 544,643
Number of extensions: 23728
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 141
Effective length of database: 925,261
Effective search space: 130461801
Effective search space used: 130461801
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)