BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3788.p
         (145 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981901|ref|YP_001352123.1| universal stress protein (Usp) ...   152   7e-39

>gi|152981901|ref|YP_001352123.1| universal stress protein (Usp)
           [Janthinobacterium sp. Marseille]
          Length = 147

 Score =  152 bits (384), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 103/147 (70%), Gaps = 2/147 (1%)

Query: 1   MFKTILVPTDGSERSDKAIATAVDYAKNSGARLIGITVAEPYPFSPLAESS--MAIDPAL 58
           MFK IL+PTDGS  SDKA+  A+++A+  G+ L+ ++VAEPY +  L E +     DP +
Sbjct: 1   MFKKILIPTDGSPLSDKAVDAAIEFAQKMGSELLVLSVAEPYVYMGLMEGAGVFPTDPVM 60

Query: 59  YEENVKTLANQYIKKITDAAAAAGVPCQAEVVMSFNPDEEIIKAAQFHSCDAIFMASHGR 118
           Y++ VK LA +++ K+  A    GV C+  V +  +P EEI++ A+   CD IFMASHGR
Sbjct: 61  YDDKVKELAQKHLDKVEAATRDKGVSCKTVVSVGLSPYEEIVRVAEEQKCDVIFMASHGR 120

Query: 119 SGLSRIFLGSKTQKVLTHSTIPVLVLR 145
            GL+++F+GS+TQKVL H+++PVLVLR
Sbjct: 121 KGLNKLFIGSETQKVLAHTSLPVLVLR 147


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.130    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 305,066
Number of extensions: 10409
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 1,221,021
Length adjustment: 75
Effective length of query: 70
Effective length of database: 943,746
Effective search space: 66062220
Effective search space used: 66062220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)