BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3784.p (254 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase... 129 2e-31 gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 120 6e-29 gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Jant... 113 1e-26 gi|152981525|ref|YP_001354195.1| dehydrogenase/reductase family ... 107 1e-24 gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Jant... 95 5e-21 >gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase [Janthinobacterium sp. Marseille] Length = 264 Score = 129 bits (324), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/259 (33%), Positives = 135/259 (52%), Gaps = 15/259 (5%) Query: 8 LAGKTVLITAAAQGIGRAATELFAREGARVI------ATDISRPHLDALAGLAGVET--R 59 L GKT L+T + GIG + A++GA ++ A +I AL GV+ Sbjct: 6 LHGKTALVTGSTSGIGLGIAQALAQQGADIVLNGFGDANEIKTLQA-ALMRNYGVKCVHH 64 Query: 60 ILDVTDDAAIKALVA----EIGTVDVLFNCAGYVAAGNILECDDKAWDFSFNLNAKAMFH 115 D++ A I+A++A + G VD+L N AG I + + WD +N + FH Sbjct: 65 PADMSKPAEIEAMMAFAAQQFGRVDILVNNAGIQHTETIEDFPVEKWDAIIAINLSSAFH 124 Query: 116 TIRAVLPGMLAKKAGSIVNIASAASSVKGVANRFAYGASKAAVVGLTKSVAADFVAQGIR 175 T R LP M AK G I+NIAS V G + AY A+K +VGLTK A + GI Sbjct: 125 TTRLALPMMQAKNWGRIINIASVHGLV-GSVQKSAYVAAKHGIVGLTKVTALEMAHTGIT 183 Query: 176 CNAICPGTIESPSLNQRIATQAKETGKSEDEVRAAFVA-RQPMGRIGKAEEVAALALYLA 234 CNAICPG + +P + +++ +A G S++ + V+ +QP G +++ ALA++L Sbjct: 184 CNAICPGWVLTPLVQKQVDARAAREGLSDEAAKKDLVSEKQPSGEFVTPQQLGALAVFLC 243 Query: 235 SDESNFTTGSVHMIDGGWS 253 S+ + G+ +DGGW+ Sbjct: 244 SEAAVQVRGAAWNMDGGWT 262 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 120 bits (302), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 87/250 (34%), Positives = 134/250 (53%), Gaps = 18/250 (7%) Query: 8 LAGKTVLITAAAQGIGRAATELFAREGARVIATDISRPHLDALAGLAGVETR--ILDVTD 65 L+G+ L+T A++GIGRA + A+ GA+VI T S A++ G + +LDV D Sbjct: 6 LSGQVALVTGASRGIGRAIAQELAKLGAKVIGTATSESGAAAISEYLGNGGKGVVLDVND 65 Query: 66 DAAIKALVAEI----GTVDVLFNCAGYVAAGNILECDDKAWDFSFNLNAKAMFHTIRAVL 121 A AL+ EI G V +L N AG + D+ WD N A+ RAVL Sbjct: 66 AARSVALIDEIQKEFGAVSILVNNAGITQDQLAMRMKDEEWDSVIATNLTAVGRLSRAVL 125 Query: 122 PGMLAKKAGSIVNIASAASSVKGVANRFAYGASKAAVVGLTKSVAADFVAQGIRCNAICP 181 GM+ K G I+NI S S G A + Y A+KA V G+++++A + ++ I N I P Sbjct: 126 RGMMKAKTGRIINITSVVGS-SGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNCIAP 184 Query: 182 GTIESPSLNQRIATQAKETGKSEDEVRAAFVARQPMGRIGKAEEVAALALYLASDESNFT 241 G I+ T +T SE ++ AA + + P+GR+G E++AA +LAS ++++ Sbjct: 185 GFID---------TDMTKT-LSEQQI-AALLQQVPLGRLGVPEDIAAAVSFLASPQASYI 233 Query: 242 TGSVHMIDGG 251 TG+ ++GG Sbjct: 234 TGTTLHVNGG 243 >gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 278 Score = 113 bits (282), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 92/252 (36%), Positives = 132/252 (52%), Gaps = 19/252 (7%) Query: 12 TVLITAAAQGIGRAATELFAREGARVIATDISRPHLDALAG---LAGVETRIL--DVTDD 66 TVLIT A GIGRA FAREG RV + +ALA G E L DV + Sbjct: 34 TVLITGALTGIGRATAFAFAREGYRVAVSGRREEAGNALAAELRALGNEAEFLLADVRFE 93 Query: 67 AAIKALVAE----IGTVDVLFNCAGYVAA-GNILECDDKAWDFSFNLNAKAMFHTIRAVL 121 A ++ LV + G +DV N AG I+E + +F +N +++ + Sbjct: 94 ADVRNLVEQTVVRFGRIDVAVNNAGTEGQLAPIVEQSAANYAETFGVNVLGTMLSLKHEM 153 Query: 122 PGMLAKKAGSIVNIASAASSVKGVANRFAYGASKAAVVGLTKSVAADFVAQGIRCNAICP 181 MLA+ +GSI+N++S A V G+A Y ASK AV GLTKS A + A G+R NA+ P Sbjct: 154 RVMLAQGSGSIINLSSVAGKV-GIAGASVYVASKHAVEGLTKSAALEGAAAGVRVNAVAP 212 Query: 182 GTIESPSLNQRIATQAKETGKSEDEVRAAFVARQPMGRIGKAEEVAALALYLASDESNFT 241 G + + L++ + G SE E +A F+A P GR +E+A ++LASD+ ++ Sbjct: 213 GPVATEMLDRFV-------GGSE-ENKAGFLATIPAGRAATPDEIAQTIVFLASDKVSYL 264 Query: 242 TGSVHMIDGGWS 253 TG +DGG + Sbjct: 265 TGQSIAVDGGHT 276 >gi|152981525|ref|YP_001354195.1| dehydrogenase/reductase family protein [Janthinobacterium sp. Marseille] Length = 248 Score = 107 bits (266), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 125/254 (49%), Gaps = 18/254 (7%) Query: 5 TGRLAGKTVLITAAAQGIGRAATELFAREGARVIATDISRPHLDALAGLAGVETRILDVT 64 T L KT++IT A IG A + GA ++ D+ A A +DV+ Sbjct: 2 THSLRNKTIIITGAGGNIGHAYCDGLVAAGANIVMADLQDLSAQAQAYGQQAIAMKIDVS 61 Query: 65 DDAAIKALV----AEIGTVDVLFNCAGYVAA---GNILECDDKAWDFSFNLNAKAMFHTI 117 D A+I+ + A G +D + N AG+ G+ ++ WD + +N + ++ Sbjct: 62 DPASIEMMAKQTHAHFGRIDGIINNAGFFKGCSFGSFMDIPIDEWDRCYEINVRGVWLCC 121 Query: 118 RAVLPGMLAKKAGSIVNIASAASSVKGVANRFAYGASKAAVVGLTKSVAADFVAQGIRCN 177 RAV P M + +G I+N++S + KGV N Y +SKAA++GLT+S+A + A I+ N Sbjct: 122 RAVFPYMREQGSGKIINVSSN-TPYKGVPNFLHYVSSKAAIIGLTRSLAREVGAHNIQAN 180 Query: 178 AICPGTIESPSLNQRIATQAKETGKSEDEVRAAFVARQPMGRIGKAEEVAALALYLASDE 237 +CP I + +A Q G DE +A + + R ++ AL+L SD Sbjct: 181 TLCPDLIPDADI---LAKQ----GSVADERT---IAGRCLQRSQTPHDMVGAALFLLSDG 230 Query: 238 SNFTTGSVHMIDGG 251 S+F TG +++GG Sbjct: 231 SDFITGQSLLVNGG 244 >gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Janthinobacterium sp. Marseille] Length = 246 Score = 94.7 bits (234), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 97/194 (50%), Gaps = 15/194 (7%) Query: 62 DVTDDAAIKALVA----EIGTVDVLFNCAGYVAAGNILECDDKAWDFSFNLNAKAMFHTI 117 DV+D + + VA E+G VDVL N AG + WD N ++F+ Sbjct: 60 DVSDYDSAQQCVAQIEKEMGPVDVLVNNAGITRDITFKKMGKPDWDAVMATNLDSVFNMT 119 Query: 118 RAVLPGMLAKKAGSIVNIASAASSVKGVANRFAYGASKAAVVGLTKSVAADFVAQGIRCN 177 + V GM+ + G I+NI+S + KG + Y A+KA + G TK++A + + + N Sbjct: 120 KPVCDGMVERGWGRIINISSV-NGQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVN 178 Query: 178 AICPGTIESPSLNQRIATQAKETGKSEDEVRAAFVARQPMGRIGKAEEVAALALYLASDE 237 I PG I + + +D + V + PMGR+GK EE+A L YLASDE Sbjct: 179 TISPGYIGTKMV----------MAIPQDVLDTKIVPQIPMGRLGKPEEIAGLVAYLASDE 228 Query: 238 SNFTTGSVHMIDGG 251 + F TG+ I+GG Sbjct: 229 AAFLTGANIAINGG 242 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.130 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 518,391 Number of extensions: 18842 Number of successful extensions: 155 Number of sequences better than 1.0e-08: 22 Number of HSP's gapped: 115 Number of HSP's successfully gapped: 22 Length of query: 254 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 173 Effective length of database: 921,564 Effective search space: 159430572 Effective search space used: 159430572 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)