BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3781.p
         (268 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981681|ref|YP_001351726.1| ABC transporter substrate bindi...   186   2e-48
gi|152981667|ref|YP_001351969.1| solute-binding periplasmic prot...    66   3e-12

>gi|152981681|ref|YP_001351726.1| ABC transporter substrate binding
           protein [Janthinobacterium sp. Marseille]
          Length = 259

 Score =  186 bits (471), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 100/244 (40%), Positives = 146/244 (59%)

Query: 17  GLACLAQAAQADALADIKARKKVLVAIDLGAPPFGMTNAKLEPQGSDVETARLLAKDLGV 76
           G   L   A+ADAL DI+ +  + VA+    PPFG     + PQG D++ A L+AK LGV
Sbjct: 13  GALLLTNVARADALDDIQKKGVLRVAVPQDFPPFGSVTTDMTPQGLDIDVATLIAKKLGV 72

Query: 77  ELEIVQVTGPNRIPFLMTGKADMVISSFSITPERQKVVAFTQPYGASQFVVAAPKTENIK 136
           ++E++ VT  NRIP+L T K D+VISS    PER+KV+ F+  Y      V  P  + + 
Sbjct: 73  KVELIPVTSANRIPYLQTKKVDLVISSMGKNPEREKVIDFSAAYAPFFNGVFGPADQKVA 132

Query: 137 SINDLVGKRVAVVRGNMQDSLLTPIAPKGTNIVRFDDDATVTAAILSGQVDALCTPNSLA 196
           +  DL GK + V RG+++D  L+ IAP+   I R++D+    ++ LS QV  + T N +A
Sbjct: 133 APADLAGKTIGVTRGSVEDLELSKIAPESATIKRYEDNNGTISSFLSNQVQLVATGNVIA 192

Query: 197 SAIAKQNPSKNLETKFAIKDIPYAIGLRKGEPALEKWLNEWITANLKNGKLPAIYQQWVG 256
           +AI  +NP K  ETKF IK+ P +IGL KGE  L + +N  I    K+G L  + ++W+G
Sbjct: 193 AAIIAKNPPKKPETKFLIKNSPCSIGLNKGEEKLLEKVNAIIAQAKKDGSLNTLTEKWLG 252

Query: 257 SPMP 260
            P+P
Sbjct: 253 LPLP 256


>gi|152981667|ref|YP_001351969.1| solute-binding periplasmic protein
           of glutamate/aspartate ABC transporter
           [Janthinobacterium sp. Marseille]
          Length = 300

 Score = 65.9 bits (159), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 105/245 (42%), Gaps = 14/245 (5%)

Query: 29  ALADIKARKKVLVAIDLGAPPFGMTNAKLEPQGSDVETARLLAKDLGVELEIVQ------ 82
            L  IK    + +     + PF   + K +P G  V+    +   +  +L++        
Sbjct: 31  TLKKIKDTNSITIGYRESSIPFSFLDDKQQPIGYAVDLCMKIVDTVKADLKLPNLKVVMQ 90

Query: 83  -VTGPNRIPFLMTGKADMVISSFSITPERQKVVAFTQPYGASQFVVAAPKTENIKSINDL 141
            VT  NRIP L  G  D+   S + +  RQ+ V+F   Y       A  KT NI S++DL
Sbjct: 91  PVTSSNRIPLLRNGTIDLECGSTTNSKVRQEQVSFGPNYFVINVTAAVKKTSNINSLDDL 150

Query: 142 VGKRVAVVRGNMQDSLLTPIAPKGTNI----VRFDDDATVTAAILSGQVDALCTPNS-LA 196
            GK ++   G     LL     K  NI    +   D A     +   +  A    N  LA
Sbjct: 151 NGKTISTTSGTTSVPLLKGYK-KTENIQVKEIYGKDHAEAFLLMADDRAVAFVMDNILLA 209

Query: 197 SAIAK-QNPSKNLETKFAIKDIPYAIGLRKGEPALEKWLNEWITANLKNGKLPAIYQQWV 255
             IA  + P        ++   PY++ LRK +P  +  +++ I A +K+G++  IY +W 
Sbjct: 210 GQIANSKRPGDYKILPESLSQEPYSMMLRKDDPQFKALVDKSIGAVMKSGEINKIYAKWF 269

Query: 256 GSPMP 260
            +P+P
Sbjct: 270 TTPIP 274


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 573,209
Number of extensions: 22603
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 2
Length of query: 268
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 186
Effective length of database: 917,867
Effective search space: 170723262
Effective search space used: 170723262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)