BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3780.p (244 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 273 7e-75 gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type tr... 213 1e-56 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 160 6e-41 gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 150 7e-38 gi|152980121|ref|YP_001354989.1| ABC transport system ATP-bindin... 150 7e-38 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 273 bits (698), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 129/238 (54%), Positives = 183/238 (76%), Gaps = 1/238 (0%) Query: 4 IVKIKDLHKSFGSNKVLNGVSLEVQQGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIHV 63 ++ I ++ KS+GSN+VL G+ ++V+ G+++AIIGKSGSGKSTLLRC+NGLE +D G I V Sbjct: 3 LIAIDNVKKSYGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSISV 62 Query: 64 CGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTDEAKQIAHK 123 G + +L LR LR +VG++FQ +NLFPHL+V RNI ++ +K +S +A+ +A K Sbjct: 63 AGSHLGK-SELELRNLRLKVGMIFQQFNLFPHLSVGRNIMISPMIVKGVSEKDARALAMK 121 Query: 124 VLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKVM 183 L+ VGL K +++P+QLSGGQ QRVAIAR+L+M P+ +L DEVTSALDPEL EVL V+ Sbjct: 122 NLEKVGLSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELVNEVLNVV 181 Query: 184 EDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEMGPPDELFSNPRTAELQKFVA 241 LA GMT+++VTHEM FAR++ D +VFMHQG+V E+G P+++F+NP T EL++F+ Sbjct: 182 RGLAHEGMTLIMVTHEMRFAREVCDRVVFMHQGKVHEIGAPEDIFANPATPELKQFLG 239 >gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 213 bits (541), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 111/238 (46%), Positives = 157/238 (65%), Gaps = 1/238 (0%) Query: 4 IVKIKDLHKSFGSNKVLNGVSLEVQQGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIHV 63 ++++ + K +G+ +VL + +V +G +V + G SGSGKSTL++ +NGLE G I V Sbjct: 1 MIELDKVSKWYGNFQVLTDCTTQVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQQGKITV 60 Query: 64 CGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTDEAKQIAHK 123 G + P K NL LR ++G+VFQ++ LFPHL++ N+TLA + K S +A + K Sbjct: 61 DGISVGDP-KTNLSSLRSRIGMVFQNFELFPHLSISENLTLAQVKVLKRSLPDATERGLK 119 Query: 124 VLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKVM 183 L VGL K+ +P QLSGGQ QRVAIAR+L+M P MLFDE TSALDPE+ EVL VM Sbjct: 120 YLDRVGLIAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVM 179 Query: 184 EDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEMGPPDELFSNPRTAELQKFVA 241 LA+ GMTM++VTHEM FA+K+A+ ++FM +G + E DE F R+ + F+A Sbjct: 180 VGLAQEGMTMMVVTHEMGFAKKVANRVIFMDKGLIVEDCTKDEFFGTTRSDRARDFLA 237 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 160 bits (405), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 92/243 (37%), Positives = 145/243 (59%), Gaps = 11/243 (4%) Query: 5 VKIKDLHKSFGSNKVLNGVSLEVQQGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIHVC 64 +++K++ K FG+ LN VSL+ G++ A++G SG GK+TLLR + GLE+ D G + + Sbjct: 3 IEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 65 GHDIHHPDKLNLRELR-KQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTDEAKQIAHK 123 G D + R +R +QVG VFQ Y LF H+TV NI L + QI K Sbjct: 63 GEDA------SARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESQIKEK 116 Query: 124 V---LQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVL 180 V L+LV L+ + YP QLSGGQ QR+A+AR+LA+ P ++L DE ALD ++ E+ Sbjct: 117 VTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELR 176 Query: 181 KVMEDLARG-GMTMVLVTHEMAFARKLADVLVFMHQGQVWEMGPPDELFSNPRTAELQKF 239 + + L +T + VTH+ A ++AD +V M++G V ++G P ++++NP + + F Sbjct: 177 RWLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVYGF 236 Query: 240 VAS 242 + + Sbjct: 237 LGN 239 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 150 bits (379), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 89/244 (36%), Positives = 143/244 (58%), Gaps = 13/244 (5%) Query: 3 AIVKIKDLHKSFGSNKVLNGVSLEVQQGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIH 62 A+++I++L + FG N V++ +SL ++ G+ ++G SG GK+TLLR + G + DAG I Sbjct: 2 ALLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQIL 61 Query: 63 VCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTDEAKQIAH 122 + G D+ + ++ V VFQ+Y LFPH+TV NI L +M+ +I Sbjct: 62 LDGVDL-----TGVPPEQRPVRTVFQNYALFPHMTVGGNIAFPL----EMANTPKAEIQK 112 Query: 123 KV---LQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEV 179 KV L+ V L YP +LSGGQ QRV+IAR+L P+L+L DE SALD +L ++ Sbjct: 113 KVDEALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQM 172 Query: 180 LKVMEDLARG-GMTMVLVTHEMAFARKLADVLVFMHQGQVWEMGPPDELFSNPRTAELQK 238 + +L + G+T + VTH+ A A L+ + M++GQV ++ P ++S PR+ + Sbjct: 173 QIELINLQKEVGITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSYPRSRFVAD 232 Query: 239 FVAS 242 F+ + Sbjct: 233 FIGT 236 >gi|152980121|ref|YP_001354989.1| ABC transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 267 Score = 150 bits (379), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 144/233 (61%), Gaps = 5/233 (2%) Query: 1 MSAIVKIKDLHKSFGSNKVLNGVSLEVQQGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGD 60 MS +V+I+DLH ++G +L+ ++++ +G+++A++G SGSGK+T+LR + G + AG Sbjct: 1 MSNLVEIRDLHFAYGERPILSELNMDFPRGKVIAVMGGSGSGKTTVLRLIGGQLRPQAGQ 60 Query: 61 IHVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTDEAKQI 120 + V G +H D + +LR+++G++FQ LF ++V N+ L +S + + + Sbjct: 61 VTVDGQVVHELDTKAVYQLRRKMGMLFQHGALFTDISVFENVAFPLREHTGLSEELIRDL 120 Query: 121 AHKVLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDP---ELTA 177 L VGL N + P ++SGG A+RVA+ARS+A+ PEL+++DE + LDP +TA Sbjct: 121 VLMKLHTVGLRNAAQLMPAEISGGMARRVALARSIALDPELIMYDEPFAGLDPISMGMTA 180 Query: 178 EVLKVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEMGPPDELFSN 230 +++ + D G T +LV+H++ + +AD + F+ +G + G P E+ ++ Sbjct: 181 NLIRKLNDAL--GSTTILVSHDVHESFSIADYVYFLSKGAIVAEGTPAEMMAS 231 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 536,738 Number of extensions: 20703 Number of successful extensions: 293 Number of sequences better than 1.0e-08: 60 Number of HSP's gapped: 191 Number of HSP's successfully gapped: 63 Length of query: 244 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 163 Effective length of database: 921,564 Effective search space: 150214932 Effective search space used: 150214932 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)