BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3779.p
         (216 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport s...   212   2e-56
gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type tr...    96   1e-21
gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate tr...    91   6e-20

>gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport
           system, permease component [Janthinobacterium sp.
           Marseille]
          Length = 218

 Score =  212 bits (539), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/216 (48%), Positives = 154/216 (71%), Gaps = 1/216 (0%)

Query: 1   MNAFSFLHV-EYLLQAAVWTVVLSLVAFVFGGLAGFVIALWRVSPHASLRTIASLYIQVV 59
           M +FS   +   LL A  WTVVLSLV F+ GG+ G +I  +R S   +LR +A +YI++ 
Sbjct: 1   MISFSLWDILRNLLLAGRWTVVLSLVTFLLGGMLGLLILFFRTSKSGALRNVARIYIEIF 60

Query: 60  QGIPLLVILFVAYFGLAIAGLKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEAA 119
           QG PLL+ LF+ +FG+A+ G+++   +AAG++  ++ A+FL EIWRGC++A+P+ QWEA+
Sbjct: 61  QGTPLLMQLFLVFFGIALFGIEVPAWLAAGLTLTLWSASFLAEIWRGCVEAIPRGQWEAS 120

Query: 120 QCLGLNRFEQLSKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLARAGQIINNST 179
             L +N  +Q+  VILPQA++IA PPT+GF VQI+K T++ S+IGFV+L++A  +I N+T
Sbjct: 121 SVLAMNYVQQMRYVILPQALRIALPPTIGFSVQIIKGTAVTSIIGFVELSKAATVITNAT 180

Query: 180 FQPFTVFGCVALIYFCLCFPLSALSKHFERKLNVSH 215
           F PFTV+    L YF LC+PLS  S+  ERK + +H
Sbjct: 181 FMPFTVYAAAGLFYFILCWPLSRYSQFLERKFHAAH 216


>gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type
           transport system permease protein [Janthinobacterium sp.
           Marseille]
          Length = 243

 Score = 96.3 bits (238), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 107/216 (49%), Gaps = 11/216 (5%)

Query: 9   VEYLLQAAVWTVVLSLVAFVFGGLAGFVIALWRVSPHASLRTIASLYIQVVQGIPLLVIL 68
           +E LL    WT+ ++L A++F  + G ++ + R S    L  +   Y+++ + IPLLV  
Sbjct: 18  LESLLSGLGWTLAVALFAWIFAFVVGSIVGVGRTSEKRWLVRLGGAYVELFRNIPLLVQF 77

Query: 69  FVAYF---GLAIAG----LKLTP----LVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWE 117
           FV YF   GL  A     + L P     V A +    + ++ + E  R  IQA+P+ Q  
Sbjct: 78  FVWYFVVPGLVPAVKAWVITLDPTEHQFVTAVVCLGFFTSSRIAEQVRSGIQALPRGQRN 137

Query: 118 AAQCLGLNRFEQLSKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLARAGQIINN 177
           A   LGL   +    V+LP A +I  PP    ++ ++KNT++A  IG V+L    + +  
Sbjct: 138 AGYALGLTTAQTYRYVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGLVELFFRTREMGE 197

Query: 178 STFQPFTVFGCVALIYFCLCFPLSALSKHFERKLNV 213
            TF+ F  FG   LIY  +    + L    ER+L V
Sbjct: 198 MTFRYFEAFGAATLIYVVIAMTANRLMALVERRLAV 233


>gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate
           transport system permease protein [Janthinobacterium sp.
           Marseille]
          Length = 228

 Score = 90.9 bits (224), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 114/210 (54%), Gaps = 11/210 (5%)

Query: 11  YLLQAAVWTVVLSLVAFVFGGLA-GFVIALWRVSPHASLRTIASLYIQVVQGIPLLVILF 69
           YLL    +T+ L++VA  FGG+  G ++A+ R+S + +L  IA+ Y+ +++ IPLL+++F
Sbjct: 15  YLLAGLQYTLQLTVVA-AFGGVIFGTLLAMARLSSNKTLSLIAAAYVNLMRSIPLLLVIF 73

Query: 70  VAYFGL-----AIAG----LKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEAAQ 120
             YF +      I G    ++L    +A I+F ++ AA+  EI R  IQ++ K Q  A  
Sbjct: 74  WFYFLMPIVLQTITGSERPVQLGADRSAYITFIMFEAAYFCEIMRAGIQSISKGQVNAGY 133

Query: 121 CLGLNRFEQLSKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLARAGQIINNSTF 180
            LGL   + +  V+LPQA +   P  +   + + ++ SL S++   D   A   +     
Sbjct: 134 ALGLTYRQSMQLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFVGAAVKVAQRDS 193

Query: 181 QPFTVFGCVALIYFCLCFPLSALSKHFERK 210
           +   ++  VA++YF L F LS L K  +++
Sbjct: 194 RVVEMYLFVAIVYFVLSFALSTLVKQLQKR 223


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.331    0.142    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 474,098
Number of extensions: 17806
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 4
Length of query: 216
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 137
Effective length of database: 928,958
Effective search space: 127267246
Effective search space used: 127267246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 127 (53.5 bits)