BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3778.p (227 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport s... 151 3e-38 gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate tr... 97 1e-21 gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport s... 90 1e-19 gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type tr... 74 8e-15 >gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 223 Score = 151 bits (382), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 86/191 (45%), Positives = 133/191 (69%) Query: 1 MNYTFDFMSVFAQWDRLLLGAWLTIQLSALSIVLGFVLGTLCAMAGKSHLEVLRGLVKAY 60 M Y F+F+S F L+ G T++L A+ VLG +G A A LR +V AY Sbjct: 1 MAYQFEFLSTFDYSGVLVKGVLTTVELIAVGGVLGVAVGIFGAWARTQEPRWLRPVVSAY 60 Query: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTLNVGAYTTEIMRAGINSIHPGQ 120 VE+IRNTP L+Q+F +FFGL SIG +++ AA++A+ +N+GAY+TEI+RAG+ ++ GQ Sbjct: 61 VELIRNTPFLIQLFFIFFGLPSIGVQITEMQAAILAMVINLGAYSTEIIRAGVVAVARGQ 120 Query: 121 IEAAECLGMSRLHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 IEAA L M+R+ ++ H++L PA+++++P+L+SQ +++ML S++ SQI+ EEL+ AN + Sbjct: 121 IEAALSLSMTRVQIFRHIILRPALQKIWPALSSQIVIVMLGSAVCSQIAVEELSFAANFI 180 Query: 181 QSETFRSFEVY 191 Q FR+FE Y Sbjct: 181 QGRNFRAFEAY 191 >gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate transport system permease protein [Janthinobacterium sp. Marseille] Length = 228 Score = 96.7 bits (239), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 102/207 (49%), Gaps = 9/207 (4%) Query: 6 DFMSVFAQWDRLLLGAWLTIQLSALSIVLGFVLGTLCAMAGKSHLEVLRGLVKAYVEIIR 65 DF + W LL G T+QL+ ++ G + GTL AMA S + L + AYV ++R Sbjct: 5 DFEIITRTWPYLLAGLQYTLQLTVVAAFGGVIFGTLLAMARLSSNKTLSLIAAAYVNLMR 64 Query: 66 NTPLLVQVFLVFFGLASI---------GWKLSAETAAVIALTLNVGAYTTEIMRAGINSI 116 + PLL+ +F +F + + +L A+ +A I + AY EIMRAGI SI Sbjct: 65 SIPLLLVIFWFYFLMPIVLQTITGSERPVQLGADRSAYITFIMFEAAYFCEIMRAGIQSI 124 Query: 117 HPGQIEAAECLGMSRLHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTAT 176 GQ+ A LG++ VVL A + P L +Q I+L S+ S ++ + Sbjct: 125 SKGQVNAGYALGLTYRQSMQLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFVGA 184 Query: 177 ANLVQSETFRSFEVYAVIAVAYLVLSF 203 A V R E+Y +A+ Y VLSF Sbjct: 185 AVKVAQRDSRVVEMYLFVAIVYFVLSF 211 >gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 218 Score = 90.1 bits (222), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 114/219 (52%), Gaps = 10/219 (4%) Query: 8 MSVFAQWD---RLLLGAWLTIQLSALSIVLGFVLGTLCAMAGKSHLEVLRGLVKAYVEII 64 M F+ WD LLL T+ LS ++ +LG +LG L S LR + + Y+EI Sbjct: 1 MISFSLWDILRNLLLAGRWTVVLSLVTFLLGGMLGLLILFFRTSKSGALRNVARIYIEIF 60 Query: 65 RNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTLNVGAYTTEIMRAGINSIHPGQIEAA 124 + TPLL+Q+FLVFFG+A G ++ A AA + LTL ++ EI R + +I GQ EA+ Sbjct: 61 QGTPLLMQLFLVFFGIALFGIEVPAWLAAGLTLTLWSASFLAEIWRGCVEAIPRGQWEAS 120 Query: 125 ECLGMSRLHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLVQSET 184 L M+ + +V+L A+ P + ++ +++TS I EL+ A ++ + T Sbjct: 121 SVLAMNYVQQMRYVILPQALRIALPPTIGFSVQIIKGTAVTSIIGFVELSKAATVITNAT 180 Query: 185 FRSFEVYAVIAVAYLVLSFLFRGAFWLISQMAFVRKRKL 223 F F VYA + Y +L W +S+ + +RK Sbjct: 181 FMPFTVYAAAGLFYFILC-------WPLSRYSQFLERKF 212 >gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type transport system permease protein [Janthinobacterium sp. Marseille] Length = 243 Score = 73.9 bits (180), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 11/199 (5%) Query: 15 DRLLLGAWLTIQLSALSIVLGFVLGTLCAMAGKSHLEVLRGLVKAYVEIIRNTPLLVQVF 74 + LL G T+ ++ + + FV+G++ + S L L AYVE+ RN PLLVQ F Sbjct: 19 ESLLSGLGWTLAVALFAWIFAFVVGSIVGVGRTSEKRWLVRLGGAYVELFRNIPLLVQFF 78 Query: 75 LVFF---GL--ASIGWKLSAETA------AVIALTLNVGAYTTEIMRAGINSIHPGQIEA 123 + +F GL A W ++ + AV+ L + E +R+GI ++ GQ A Sbjct: 79 VWYFVVPGLVPAVKAWVITLDPTEHQFVTAVVCLGFFTSSRIAEQVRSGIQALPRGQRNA 138 Query: 124 AECLGMSRLHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLVQSE 183 LG++ Y +V+L A + P LTS+ + L+ +++ I EL + Sbjct: 139 GYALGLTTAQTYRYVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGLVELFFRTREMGEM 198 Query: 184 TFRSFEVYAVIAVAYLVLS 202 TFR FE + + Y+V++ Sbjct: 199 TFRYFEAFGAATLIYVVIA 217 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.328 0.137 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 405,037 Number of extensions: 12356 Number of successful extensions: 80 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 78 Number of HSP's successfully gapped: 4 Length of query: 227 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 147 Effective length of database: 925,261 Effective search space: 136013367 Effective search space used: 136013367 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 128 (53.9 bits)