BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3776.p (324 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 83 2e-17 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 80 2e-16 gi|152980807|ref|YP_001354140.1| transcriptional regulator CysB-... 77 1e-15 gi|152979818|ref|YP_001353268.1| LysR family transcriptional reg... 74 2e-14 gi|152982593|ref|YP_001352341.1| LysR family transcriptional reg... 72 4e-14 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 82.8 bits (203), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 100/200 (50%), Gaps = 4/200 (2%) Query: 27 VSRLRFRQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMEDALGVTLFDRSPRGIEA 86 +S + R + + E+G L KAA+ + + QP ++ + +E LGVTLF R PRG+E Sbjct: 1 MSSIDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMEL 60 Query: 87 TELGRCVIRYARLIQSDVANLREELQNMISGRGGRLSIGTIMGAA--PFVTRALSRLREI 144 TE G+ ++ ARLI V E ++ + G GRL++G AA PF+ + R+ Sbjct: 61 TESGQALLIDARLILEQVNTTIEGVRRISLGESGRLAVGFTESAALHPFIPAVIRAFRQK 120 Query: 145 QPEVSIEISEDTSARQLLLLDQGRIDLMIGRSSVSSQPNLYHYEMLRGEPMCIVSGIDHP 204 P V + + E + + L R+D+ RS + S L ML E M + I H Sbjct: 121 SPGVIMAVEESNTNELVEDLRHNRLDVAFIRSPIGSAAGLKMETML-VEEMIVALPITHR 179 Query: 205 LATAQK-VRLQELAGASWIL 223 LA +K + L LA +IL Sbjct: 180 LAQRRKSLPLTALAEDDFIL 199 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 80.1 bits (196), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 75/300 (25%), Positives = 137/300 (45%), Gaps = 18/300 (6%) Query: 30 LRFRQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMEDALGVTLFDRSPRGIEATEL 89 + R + A + S +A+E +H+TQP + + ++ED LG+ LFDR R ++ T Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTA 60 Query: 90 GRCVIRYAR--LIQSDVA-NLREELQNMISGRGGRLSIGTIMGAAPF-VTRALSRLREIQ 145 G YA+ L++ D + EL+N+ + GR++ G + F + L+ ++ Sbjct: 61 GELFQVYAKRALLEVDAGLDALNELENL---KHGRVTFGVLSSFGTFHLPPILADFNKVY 117 Query: 146 PEVSIEISEDTSAR-QLLLLDQGRIDLMIGRSSVSSQPNLYHYEMLRGEPMCIVSGIDHP 204 P + I + S + LLD DL G + S + E L P+ +V G HP Sbjct: 118 PGIKITVLRLRSGEIEERLLDG---DLHFGVAYAPSSTEQINVEPLFTVPLALVVGDHHP 174 Query: 205 LATAQKVRLQELAGASWILYSSNMPMRIWIEHEFKLEGVKVPGNVIETASPFVTITLLAQ 264 L + + L EL ++ S R ++ G+ P V+E + + + Sbjct: 175 LVGSAGITLNELNEHELVMLSDEYNSRKMMDAILLANGI-TPRIVMEMNAIEPILATVRH 233 Query: 265 SNMVAVMPLDIAHFFAARQMLGILPVNLKTRIEH-YGIVTRKNSTLSSLAKMFIQILRQQ 323 S++ ++ ++ +M G+ V L + H G+ TR+NS LS+ A+ + +RQ+ Sbjct: 234 SSLATILSANL-----VDEMPGLHQVPLTPTVTHTVGLFTRRNSHLSAAARALVDTIRQR 288 >gi|152980807|ref|YP_001354140.1| transcriptional regulator CysB-like protein [Janthinobacterium sp. Marseille] Length = 313 Score = 77.4 bits (189), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 7/209 (3%) Query: 40 ALDEQGSLHKAAEVMHMTQPAATKALHEMEDALGVTLFDRSPRGIEA-TELGRCVIRYAR 98 A+ + +L +AA+ + +QP +KA+ E+E+ LGV +F R + I TE GR V++ Sbjct: 12 AVRQNFNLTEAAKALFTSQPGVSKAIIELEEELGVDIFSRHGKRIRGLTEPGRAVLKSVE 71 Query: 99 LIQSDVANLREELQNMISGRGGRLSIGTIMGAAPF-VTRALSRLREIQPEVSIEISEDTS 157 LI ++ L+ + G +I T A + + + + + P+V + + + Sbjct: 72 LIMQEIDGLKRIGNEFAAHDSGSFTIATTHTQARYSLPKVVQAFTQKFPKVRLSLLQGNP 131 Query: 158 AR--QLLLLDQGRIDLMIGRSSVSSQPNLYHYEMLRGEPMCIVSGIDHPLATAQKVRLQE 215 + ++L+DQ DL I S++S L + E +V +DHPL ++ + L+E Sbjct: 132 KQVADMVLMDQA--DLAIATESIASIEGLISLPCYQWEHQVVVP-VDHPLLKSKSITLEE 188 Query: 216 LAGASWILYSSNMPMRIWIEHEFKLEGVK 244 L I Y S R I+H F L +K Sbjct: 189 LTAYPLITYDSAFAGRNKIDHAFALRNLK 217 >gi|152979818|ref|YP_001353268.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 79/294 (26%), Positives = 140/294 (47%), Gaps = 22/294 (7%) Query: 37 LLTALDEQGSLHKAAEVMHMTQPAATKALHEMEDALGVTLFDRSPRGIEATELGRCVIRY 96 LL A+ + GSL KAA + AA+ L E G+TLF RS G+ T GR V+ Sbjct: 10 LLVAIADAGSLSKAAASFPIALSAASNRLRHFEQRSGLTLFQRSAEGMHLTPAGRLVLDR 69 Query: 97 ARLIQSDVANLREELQNMISGRGGRLSI-GTIMGAAPFVTRALSRLREIQPEVSIEISED 155 AR + + NL++ L+++ R L + GT + + F+ AL PE+ +++ E Sbjct: 70 ARHVLLETENLKDTLRDLTGQRRITLRLAGTTVANSTFLPAALGPFLADYPEIDLQLVEH 129 Query: 156 TSARQLLLLDQGRIDLMIGRSSVSSQ---PNLYHYEMLRGEPMCIVSGIDHPLATAQKVR 212 SA LL + G +++ + ++++ P + ++ L + + SG H LA V+ Sbjct: 130 KSADVLLAVQSGEVEVGVLDGNLATSDVIPLPFRHDKLV---LLVPSG--HALAERPSVQ 184 Query: 213 LQELAGASWILYSSNMPMRIWIEHEFKLEGVKVPGNVIETASPFVTIT-LLAQSNMVAVM 271 L++ G +++ M+ +IE E ++ + P V A F I L+A+ +A++ Sbjct: 185 LKDALGFAFVCLPPERAMQRFIE-EMAVQNSR-PLRVRVRAPSFYAIAQLVAEQAGIAML 242 Query: 272 PLDIAHFFAARQMLGILPVNLKTRIEHYG-----IVTRKNSTLSSLAKMFIQIL 320 P AA + + LPV++ + + I R TLS+ A+ + L Sbjct: 243 PEA-----AALRHIRELPVHMVALEDAWATRELRICIRAWDTLSTHARQLVDYL 291 >gi|152982593|ref|YP_001352341.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 297 Score = 72.4 bits (176), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 81/303 (26%), Positives = 144/303 (47%), Gaps = 17/303 (5%) Query: 30 LRFRQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMEDALGVTLFDRSPRGIEATEL 89 + RQ+ + E+ +AA +HMTQP ++++ +E LGV LF R+ R + T Sbjct: 3 IELRQLRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALTPA 62 Query: 90 GRCVIRYARLIQSDVANLREELQNMISGRGGRLSIGTIMGA-APFVTRALSRLREIQPEV 148 G ++ A+ I A L + ++ SG GRLS+ + A + L RE P+V Sbjct: 63 GIALLPEAQRILQQTAALPDLMRRAASGASGRLSLAFVSTADYSVLPHFLREFREAYPQV 122 Query: 149 SIEISEDTSARQLLLLDQGRIDLMIGRSSVSSQPNL-YHYEMLRGEP--MCIVSGIDHPL 205 I++ E T+ QL L QGRID+ + + + L Y + EP + + G+ + Sbjct: 123 EIDLREATTDVQLDELAQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAVPKGLKA-V 181 Query: 206 ATAQKVRLQELAGASWILYSSNMPMRIWIE-HEFKLEGVKVPG---NVIETASPFVTITL 261 Q V LQ +A I++ P RI H+ L + G ++ + A TI Sbjct: 182 RGKQTVALQAVAELPLIIF----PRRIAPAFHDAILACYRDAGLTPHIGQEAIQMQTIIG 237 Query: 262 LAQSNM-VAVMPLDIAHFFAARQMLGILPVNLKTRIEHYGIVTRKNSTLSSLAKMFIQIL 320 L + M +A++P +++ R + + KT + G+ R+++T S + F+++L Sbjct: 238 LVSAGMGIALVPQSVSNL--KRPGVDYKALADKTPLVETGMAWRRDNT-SPVLNAFLELL 294 Query: 321 RQQ 323 R++ Sbjct: 295 RKK 297 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.134 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 688,533 Number of extensions: 26209 Number of successful extensions: 135 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 134 Number of HSP's successfully gapped: 19 Length of query: 324 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 241 Effective length of database: 914,170 Effective search space: 220314970 Effective search space used: 220314970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)