BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3769.p
         (275 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982464|ref|YP_001352733.1| AraC family transcriptional reg...    69   2e-13

>gi|152982464|ref|YP_001352733.1| AraC family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 240

 Score = 69.3 bits (168), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 110/267 (41%), Gaps = 43/267 (16%)

Query: 7   FWRDPELPFLE-GRRATGSLSCYAPHTHDSFSIGIVDGGHSIFALGEQRQAIVPGDVVLV 65
           +WRD      E G  A  S      H HD   + +V  G   F +  +   +  G  + +
Sbjct: 9   YWRDGSASRAEYGFWAGDSAPALGSHFHDEGQLTLVLAGSRKFEVNNKVIRLDAGQCLYI 68

Query: 66  RAGDVHCCNPTELASWSYRMFHLDTGWLARLLDETPATRGLLASLQSQVLRAPQAVHLLD 125
            AG  HC  P           HL  G           TR L  ++  Q   A     +LD
Sbjct: 69  PAGMPHCSLP-----------HLAAG-----------TRCL--NIYYQPAHARHQPVVLD 104

Query: 126 RMTQALEARNADLQAEVITCLHELMLLCAQACVRESALTSPLAEDGDGLQRAHDFLLAHC 185
              + L A+  D+ A ++    EL L+  +A ++ +  T  L E  + L+          
Sbjct: 105 --IRQLNAQALDVPALLLQIEEELALM--RAGIQAAGSTVCLQEFRNSLE---------- 150

Query: 186 RERIALDTLAELAGTSRYQLIRQFRRRFGLTPHALQLDMKIRQARTLLQQGVSAVAAAYD 245
               ++  +A  +G SR    R+F R  G++PHA +L  ++  AR  L+ GV+    A D
Sbjct: 151 ----SIAVIASASGLSREAFSRKFTRDIGMSPHAYRLVGRLNAARRQLRDGVAVADTATD 206

Query: 246 TGFADQSHFHRAFKSRVAVTPLQYTQA 272
            GFADQSHF R F     VTP  Y  +
Sbjct: 207 FGFADQSHFGRHFFRVFGVTPGAYRNS 233


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.325    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 638,464
Number of extensions: 24914
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 193
Effective length of database: 917,867
Effective search space: 177148331
Effective search space used: 177148331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)