BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3767.p (566 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980122|ref|YP_001351965.1| long-chain fatty-acid-CoA ligas... 829 0.0 gi|152980721|ref|YP_001352572.1| acetyl-CoA synthetase [Janthino... 132 6e-32 gi|152980534|ref|YP_001355180.1| propionyl-CoA synthetase [Janth... 100 2e-22 >gi|152980122|ref|YP_001351965.1| long-chain fatty-acid-CoA ligase [Janthinobacterium sp. Marseille] Length = 560 Score = 829 bits (2141), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/560 (71%), Positives = 464/560 (82%) Query: 1 MDRFWLASYPAGVPADIDPSPYGSLVQMIDEAFVKHADRNAYVCMGKYLRYRELDAMSRA 60 MD+FWL SYP G+PA+IDP+ YGSLV+++DE+F K+ADRNA VCM K L YRE+D +S Sbjct: 1 MDKFWLKSYPEGIPAEIDPARYGSLVELLDESFQKYADRNACVCMDKALTYREVDHLSTE 60 Query: 61 LGAWLQGLGLQKGARVAIMMPNVLQYPIAIAAILRAGYTVVNVNPLYTARELEHQLKDSG 120 +GAWLQ +GLQKGARVA+MMPNVLQYPIAIAA+LRAGY +VNVNPLY RELEHQL DSG Sbjct: 61 VGAWLQSIGLQKGARVALMMPNVLQYPIAIAAVLRAGYVIVNVNPLYKPRELEHQLTDSG 120 Query: 121 AEAIFVLENFACTLQKVVAHTQIKHIVVASMGELLGTLKGAIVNLVVRHVKKLVPAWSLP 180 AEAI +LENFA TL+KV+A TQ+KH++VA+MG+L G LKG IVN VVRHVKK+VPA+SLP Sbjct: 121 AEAIIILENFAATLEKVIASTQVKHVIVATMGDLFGGLKGGIVNFVVRHVKKMVPAYSLP 180 Query: 181 NAISFSRALSQAQGQSLQPVLLTPDDIAFLQYTGGTTGVAKGAVLTHRNLVANVLQAEQW 240 A+ F L QA G +LQ L D+AFLQYTGGTTG AKGA+LTHRN++ANVLQ E W Sbjct: 181 QAVPFKEVLRQAAGMTLQRPALGHQDLAFLQYTGGTTGTAKGAMLTHRNIIANVLQNEAW 240 Query: 241 LTPALKSGQPIDQLVFVCALPLYHIFALTVCNMLGTREGALNLLIPNPRDIAGFVKELAK 300 ++P L + QL+FVCALPLYHIFALT C MLGT G +NLLIPNPRDI GF+KEL K Sbjct: 241 ISPVLNTLPKDKQLIFVCALPLYHIFALTTCGMLGTHLGVMNLLIPNPRDIPGFIKELMK 300 Query: 301 YKVNTFPAVNTLYNALLNNADFAKLDFSGYRCCVGGGMAVQKGVADKWKALTGCPIIEGY 360 YKV+ PAVNTLYN LLNN DFAK+DFS + C GGGMAVQK V DKW+ +TGC I EGY Sbjct: 301 YKVHFLPAVNTLYNGLLNNPDFAKVDFSELKLCNGGGMAVQKVVNDKWREVTGCAICEGY 360 Query: 361 GLSETSPIASANPCTIDDYTGTIGLPLPSTEIAILDDDGQPLPLGQPGEIAIRGPQVMPG 420 GLSETSP A+ANP T +++TGTIGLP+ STE+ I+D D +P G GEIAIRGPQVM G Sbjct: 361 GLSETSPTATANPPTTNEFTGTIGLPVSSTELKIIDSDDNEVPHGSAGEIAIRGPQVMAG 420 Query: 421 YWQRPDETAKVMTPDGFFKTGDIGIMDARGYTRIVDRKKDMVLVSGFNVYPNEIESVVAL 480 YW P ETA+ MT DGFFKTGDIGIMD RG+T+IVDRKKDM+LVSGFNVYP+EIE VVA Sbjct: 421 YWNNPVETAQSMTADGFFKTGDIGIMDERGFTKIVDRKKDMILVSGFNVYPSEIEGVVAA 480 Query: 481 HPGVLECACVGVPDEHTGEAVKLFVVRKDKSLTTEQLMAYCKEQFTGYKKPKYIEFRDEL 540 HPGVLECAC+GVPDEHTGEAVKLFVVR+D +LT +LMAYC+EQFTGYKKPK IEFR EL Sbjct: 481 HPGVLECACIGVPDEHTGEAVKLFVVRRDPALTEAELMAYCREQFTGYKKPKSIEFRTEL 540 Query: 541 PKTNVGKILRRELRDEPAKA 560 PK+NVGKILRRELRDE A Sbjct: 541 PKSNVGKILRRELRDEKKPA 560 >gi|152980721|ref|YP_001352572.1| acetyl-CoA synthetase [Janthinobacterium sp. Marseille] Length = 664 Score = 132 bits (332), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 150/542 (27%), Positives = 226/542 (41%), Gaps = 51/542 (9%) Query: 46 GKYLR--YRELDAMSRALGAWLQGLGLQKGARVAIMMPNVLQYPIAIAAILRAGYTVVNV 103 GK R Y+EL L+ LG+QKG RV I MP ++ A+ A R G T V Sbjct: 113 GKVTRVTYKELYERVCKFANGLKELGIQKGDRVIIYMPMSIEGVAAMQACARIGATHSVV 172 Query: 104 NPLYTARELEHQLKDSGAEAIFVLENFACTLQKVVAHTQIKHIVVASMGELLGTLKGAIV 163 ++A+ L+ ++ D+GA A+ ++ K + I +A G T++ +V Sbjct: 173 FGGFSAKSLQERIIDAGAVAVLT-SDYQVRGGKNLPLKSIVDEALALGG--CDTIRNVVV 229 Query: 164 NLVVRHVKKLVPAWSLPNAISFSRALSQAQGQSLQPVLLTPDDIAFLQYTGGTTGVAKGA 223 V + + L Q +PV + + F+ YT G+TG KG Sbjct: 230 YKRTGGEMNFVAGRDI-----WLHDLVDKQKAECEPVPVGAEHPLFILYTSGSTGKPKGV 284 Query: 224 VLTHRNLVANVLQAEQWLTPALKSGQPIDQLVFVCALPLYHIFALTVCNMLGTREGALNL 283 + + + +W +P D V+ C + I T GA + Sbjct: 285 QHSSGGYLLWAMLTMKWSFDI----KPND--VYWCTADIGWITGHTYVTYGPLACGATQI 338 Query: 284 L---IPNPRDIAGFVKELAKYKVNTFPAVNTLYNALLNNADF------AKLDFSGYRCCV 334 + +P + F + K+KV F T +L+ AD +K D S R Sbjct: 339 VFEGVPMFPNAGRFWDMVQKHKVTIFYTAPTAIRSLIKAADADPAVHPSKYDLSSLRLLG 398 Query: 335 GGGMAVQ-KGVADKWKALTG--CPIIEGYGLSET-----SPIASANPCTIDDYTGTIGLP 386 G + + +K + G CPI + + +ET SP+ A P G+ LP Sbjct: 399 SVGEPINPEAWMWYYKNIGGERCPIADTFWQTETGGHVISPMPGATPMV----PGSCTLP 454 Query: 387 LPSTEIAILDDDGQPLPLGQPGEIAIR--GPQVMPGYWQRPDETAKVMTPDGF----FKT 440 LP A++D+ G L G+ G + I+ P ++ W P+ K P + Sbjct: 455 LPGIAAAVVDEVGHDLANGKGGLLVIKRPWPSMIRNIWNDPERFQKSYFPHELGGTIYLA 514 Query: 441 GDIGIMDAR-GYTRIVDRKKDMVLVSGFNVYPNEIESVVALHPGVLECACVGVPDEHTGE 499 GD I + GY I R D++ +SG + EIES + +P V E A VG PDE TGE Sbjct: 515 GDGAIRNEETGYFTITGRIDDVLNISGHRMGTMEIESALVANPIVAEAAVVGKPDETTGE 574 Query: 500 AVKLFVVRKDKSLTTEQLMAYCKE-------QFTGYKKPKYIEFRDELPKTNVGKILRRE 552 ++ FVV K T ++ KE + KPK I F D LPKT GKI+RR Sbjct: 575 SICAFVVLKRSRPTGDEAKQIAKELRDWVAKEIGPIAKPKEIRFGDNLPKTRSGKIMRRL 634 Query: 553 LR 554 LR Sbjct: 635 LR 636 >gi|152980534|ref|YP_001355180.1| propionyl-CoA synthetase [Janthinobacterium sp. Marseille] Length = 634 Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 134/542 (24%), Positives = 216/542 (39%), Gaps = 70/542 (12%) Query: 53 ELDAMSRALGAWLQGLGLQKGARVAIMMPNVLQYPIAIAAILRAGYTVVNVNPLYTAREL 112 +L A A +Q LG+ +G RV I MP V + A+ A R G V + + L Sbjct: 93 QLHAEVSRSAAMMQALGVGQGDRVLIYMPMVAEAAFAMLACARIGAIHSVVFGGFASTSL 152 Query: 113 EHQLKDSGAEAIFVLEN---------FACTLQKVVAHTQIK--HIVVASMG-ELLGTLKG 160 ++ D+ I + + C L + +A + K H+++ G + T++G Sbjct: 153 ATRIDDATPVLIISADAGSRGCHVTPYKCLLDEAIALAEHKPAHVLMLDRGLAPMKTIEG 212 Query: 161 AIVN---LVVRHVKKLVP-AWSLPNAISFSRALSQAQGQSLQPVLLTPDDIAFLQYTGGT 216 V+ L +H+ +VP AW NA S+ + YT GT Sbjct: 213 RDVDYATLRRQHMDAVVPVAWLESNAPSY------------------------ILYTSGT 248 Query: 217 TGVAKGAVLTHRNLVANVLQAEQWLTPALKSGQPIDQLVFVCALPLYHIFALTVCNMLGT 276 TG KG VL A L L K G+ F C + + + Sbjct: 249 TGKPKG-VLRDVGGYAVALATSMDLIFCGKPGE-----TFFCTSDIGWVVGHSYIIYGPL 302 Query: 277 REGALNLL---IPNPRDIAGFVKELAKYKVNTFPAVNTLYNALLNN--ADFAKLDFSGYR 331 G +L +P D + + + KYKV + T L K D S + Sbjct: 303 LAGMTTILYEGLPIRPDASIWWSIVEKYKVTRMSSAPTAIRVLKKQPLELLQKHDLSSLK 362 Query: 332 CCVGGGMAVQKGVADKWKALTGCPIIEGYGLSETS-PIASANPCTIDDYT--GTIGLPLP 388 G + + +D + G P+I+ Y +ET PI S D T G+ G P+ Sbjct: 363 ALYLAGEPLDQTTSDWISGVLGVPVIDNYWQTETGWPIISVAKGVGDKPTRSGSPGQPMY 422 Query: 389 STEIAILDDD-GQPLPLGQPGEIAIRGP------QVMPGYWQRPDETAKVMTPDGFFKTG 441 + +++++ G+ + G + I GP Q + G QR T + T Sbjct: 423 GYKAKVINEETGEECAPNEKGVVIIEGPLPPGCLQTLYGDDQRFVSTYWRNFKREAYSTF 482 Query: 442 DIGIMDARGYTRIVDRKKDMVLVSGFNVYPNEIESVVALHPGVLECACVGVPDEHTGEAV 501 D GI DA GY I+ R D++ V+G + EIE ++ H V E A VGV + G+ Sbjct: 483 DWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHANVSEVAVVGVENPIKGQCA 542 Query: 502 KLFVVRKDKSLTTE---------QLMAYCKEQFTGYKKPKYIEFRDELPKTNVGKILRRE 552 FV+ K+ + + ++M ++ +P ++ F LPKT GK+LRR Sbjct: 543 VAFVILKNAAAAADPDEARKLEAEIMKVVDKRLGPIGRPSHVYFVSALPKTRSGKLLRRS 602 Query: 553 LR 554 ++ Sbjct: 603 IQ 604 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.138 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,313,378 Number of extensions: 54583 Number of successful extensions: 148 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 144 Number of HSP's successfully gapped: 3 Length of query: 566 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 478 Effective length of database: 895,685 Effective search space: 428137430 Effective search space used: 428137430 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)