BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3764.p (316 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980390|ref|YP_001352411.1| 2-hydroxyacid dehydrogenase [Ja... 210 8e-56 gi|152982997|ref|YP_001354733.1| glycerate dehydrogenase [Janthi... 114 8e-27 gi|152982514|ref|YP_001355351.1| formate dehydrogenase [Janthino... 98 7e-22 gi|152982822|ref|YP_001355375.1| D-isomer specific 2-hydroxyacid... 88 6e-19 >gi|152980390|ref|YP_001352411.1| 2-hydroxyacid dehydrogenase [Janthinobacterium sp. Marseille] Length = 327 Score = 210 bits (535), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 123/312 (39%), Positives = 178/312 (57%), Gaps = 16/312 (5%) Query: 10 LIVARLPQP-LLELLQQNFTCHNLILDGL-SEAQLAAIAPQVRAIAANGEAKVGREFMAR 67 ++VAR P ++E LQQ F + D + S A+L A+ K+ + +A Sbjct: 5 VLVARATFPDVIERLQQQFEVESNQEDKIFSPAELLQKMQGKDAVVVTASEKMSADVIAA 64 Query: 68 FAALEIVSVFGVGYDGVDVPAARERGIEVTHTPDVLNDDVADLAMALMLAVARKVVRADH 127 L+ + VGY+ +DV AA G+ VT+TPDVLN+ AD A L++A AR+V ++H Sbjct: 65 NPQLKAICNVAVGYNNIDVAAATAAGVMVTNTPDVLNETTADYAWTLLMANARRVCESEH 124 Query: 128 FARSGQWQNGPFP--LTTKVSGARLGIVGLGRIGQAIAKRAAAFDMQIAYHNRSR----- 180 + R+G W++ F L + GA LGI+G+GRIGQAIA+R+ FDM + YHNRSR Sbjct: 125 WLRAGNWKHWRFDSFLGADIHGATLGILGMGRIGQAIARRSTGFDMNVIYHNRSRATPEQ 184 Query: 181 ----KDVPYTYMEDIVSLAAAVDFLVMITPGGAGTRALVNAEVLEALGPQGYLINVARGS 236 + Y E+++ A D L+++ P T ++ A L + P L+N+ARG Sbjct: 185 EAYANNARYVSKEELLRSA---DHLILVLPYSPQTHHIIGAAELALMKPTATLVNIARGG 241 Query: 237 VVDETALITALQAGKIAGAGLDVFANEPHIPAELAALENVVLTPHMASGTLLTRTAMAEL 296 +VD+ ALI AL+ +IA AGLDVF NEP + + L NVVLTPH+ SG+ TR AMA+ Sbjct: 242 IVDDVALIAALRENRIASAGLDVFENEPALHPDFLTLSNVVLTPHIGSGSEKTRRAMADC 301 Query: 297 AFTNLQVHFDGK 308 A NL G+ Sbjct: 302 ASANLAAAMSGQ 313 >gi|152982997|ref|YP_001354733.1| glycerate dehydrogenase [Janthinobacterium sp. Marseille] Length = 336 Score = 114 bits (285), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 145/305 (47%), Gaps = 24/305 (7%) Query: 6 RPTVLIVARLPQPLLELLQQ-NFTCHNLILDGLSEAQLAAIAPQVRAIAANGEAKVGREF 64 +P ++I + ++E+L N L+ L +L + A+ A V F Sbjct: 2 KPKIVITHWVHPEIVEMLSSVAEVVTNDTLETLPREELLRRSKDADAVMAFMPDSVDDSF 61 Query: 65 MARFAALEIVSVFGVGYDGVDVPAARERGIEVTHTPDVLNDDVADLAMALMLAVARKVVR 124 +A L+IV GYD DV A +RG+ PD+L A+L + L+L + R V+ Sbjct: 62 LAACPKLKIVFAALKGYDNFDVDACTKRGVWFGIVPDLLTVPTAELTVGLLLGLTRHVMA 121 Query: 125 ADHFARSGQWQNG-PFPLTTKVSGARLGIVGLGRIGQAIAKRAAAFDMQIAYHNRSRKDV 183 D RSG + P ++G+ +GI+G+GR+G+AIAKR + F+M Y + V Sbjct: 122 GDDHVRSGTFHGWRPKLYGAGLAGSTIGIIGMGRVGKAIAKRLSGFEMNAVYCD----SV 177 Query: 184 PYTYMED---------IVSLAAAVDFLVMITPGGAGTRALVNAEVLEALGPQGYLINVAR 234 P +++ L DF+V + P + T L++A + + YL+N +R Sbjct: 178 PLNPVDEQAWNARQVSFDELLTCSDFVVPMLPMTSDTFHLIDAHAISKMRRGSYLLNTSR 237 Query: 235 GSVVDETALITALQAGKIAGAGLDVFANE----PHIPAEL--AALEN---VVLTPHMASG 285 GSVVDE A++ AL G +AG DVF E P P + A L N + TPH+ SG Sbjct: 238 GSVVDENAVVEALNQGHLAGYAADVFEMEEWARPDRPLTVPQALLNNRTQTLFTPHVGSG 297 Query: 286 TLLTR 290 R Sbjct: 298 VKKVR 302 >gi|152982514|ref|YP_001355351.1| formate dehydrogenase [Janthinobacterium sp. Marseille] Length = 400 Score = 97.8 bits (242), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 124/257 (48%), Gaps = 10/257 (3%) Query: 63 EFMARFAALEIVSVFGVGYDGVDVPAARERGIEVTHTPDVLNDDVADLAMALMLAVARKV 122 E +A+ L+++ G+G D D+ AA + I V + VA+ + ++L+ R Sbjct: 107 ERIAKAKKLKMIVTAGIGSDHTDLEAANKHNITVAEVTYCNSHSVAEHVVMMILSQVRNY 166 Query: 123 VRADHFARSGQWQ-NGPFPLTTKVSGARLGIVGLGRIGQAIAKRAAAFDMQIAYHNRSR- 180 + + + +G W + + +G V GRIG + + FD+++ Y +R R Sbjct: 167 IPSYNQVINGGWNIADCVERSYDLEAMSVGTVAAGRIGLRVLRLLKPFDVKLHYMDRHRL 226 Query: 181 -----KDVPYTYMEDIVSLAAAVDFLVMITPGGAGTRALVNAEVLEALGPQGYLINVARG 235 K++ TY + SL D + + P T ++N + L+ Y+IN ARG Sbjct: 227 PEAVEKELNLTYHSTLDSLTKVCDVVTLNCPLHPETEHMINEKTLKNFKRGSYIINTARG 286 Query: 236 SVVDETALITALQAGKIAGAGLDVFANEPHIPAE--LAALENVVLTPHMASGTLLTRTAM 293 + D A++ AL++G++AG DV+ +P P + + + +TPH++ +L +T Sbjct: 287 KLCDRDAIVAALKSGQLAGYAGDVWFPQP-APKDHPWRTMPHHGMTPHISGTSLTAQTRY 345 Query: 294 AELAFTNLQVHFDGKPV 310 A L+ +F+G+P+ Sbjct: 346 AAGTREILECYFEGRPI 362 >gi|152982822|ref|YP_001355375.1| D-isomer specific 2-hydroxyacid dehydrogenase [Janthinobacterium sp. Marseille] Length = 323 Score = 88.2 bits (217), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 76/264 (28%), Positives = 117/264 (44%), Gaps = 18/264 (6%) Query: 60 VGREFMARFAALEIVSVFGVGYDGVDVPAARERGIEVTHTPDVLNDDVA--DLAMALMLA 117 + R+ + + L++++ G +D+PAA RGI + + D A +L L++A Sbjct: 59 LSRQLLEKLPNLKLIAQTGKVSGHIDLPAAAARGITIVEG---VGDPTAPAELTWTLIMA 115 Query: 118 VARKVVRADHFARSGQWQNGPFP-----LTTKVSGARLGIVGLGRIGQAIAKRAAAFDMQ 172 RK+ + + + G WQ L T + G L I G GRIGQ IA AF M Sbjct: 116 AMRKLPQYVNNLKDGLWQIASMSPARNTLGTALKGRTLAIWGYGRIGQMIAAYGKAFGMD 175 Query: 173 IAYHNR------SRKDVPYTYMEDIVSLAAAVDFLVMITPGGAGTRALVNAEVLEALGPQ 226 + R + +D Y + + D L + TR +V A+ L + PQ Sbjct: 176 VMVWGRPASCEAAVRD-GYRAASSQQAFFSEADVLTLHLRLNDATRGIVTADDLARMKPQ 234 Query: 227 GYLINVARGSVVDETALITALQAGKIAGAGLDVFANEPHIPAE-LAALENVVLTPHMASG 285 +N +R +V AL AL+ G+ A LDVF NEP P L +ENV+ +PH+ Sbjct: 235 ALFVNTSRAELVATDALQAALEQGRPGYAALDVFENEPLPPGSPLLRMENVLASPHLGYV 294 Query: 286 TLLTRTAMAELAFTNLQVHFDGKP 309 + AF N+ +G P Sbjct: 295 EKDSYELYFGSAFQNIVDFANGTP 318 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 615,616 Number of extensions: 22219 Number of successful extensions: 97 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 89 Number of HSP's successfully gapped: 4 Length of query: 316 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 233 Effective length of database: 914,170 Effective search space: 213001610 Effective search space used: 213001610 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)