BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3762.p (634 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981278|ref|YP_001351967.1| ABC-type transport system invol... 989 0.0 gi|152982656|ref|YP_001351943.1| ABC-type multidrug transport sy... 288 6e-79 gi|152981213|ref|YP_001352884.1| ABC-type multidrug transport sy... 283 2e-77 gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport sy... 271 1e-73 gi|152981121|ref|YP_001351944.1| ABC-type multidrug transport sy... 263 2e-71 >gi|152981278|ref|YP_001351967.1| ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Janthinobacterium sp. Marseille] Length = 630 Score = 989 bits (2557), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/615 (77%), Positives = 543/615 (88%), Gaps = 13/615 (2%) Query: 1 MRRYPNSSASPQAPIKRQRGDWEVVRTLLPYLWTYKWRVMLALAFLVGAKLANVGVPLVL 60 MRR+ S+ S P R DW ++TL+PYLWTYKWRV LALAFL+ AK+ANVGVPLVL Sbjct: 1 MRRH--SAPSEPVPPASNRSDWSTLKTLIPYLWTYKWRVGLALAFLIAAKMANVGVPLVL 58 Query: 61 KKLVDAMTITPAHPQALLVLPLGLLVAYGALRLATALFTELRELMFARVTQRAVRTIALQ 120 K+L+D++TITP QA+LVLPLG+L+AYGALRL+T LFTELRE FA+VTQRAVRTIAL+ Sbjct: 59 KRLIDSLTITPGSTQAMLVLPLGILIAYGALRLSTTLFTELREYTFAKVTQRAVRTIALK 118 Query: 121 VFRHLHALSLRFHLNRQTGGMSRDIERGTRGVSSLVSYTLFSILPTLIEIVLVLAYLATH 180 VFRHLH+LSLRFHLNRQTGGM+RDIERGT+G+SSL+SYTLFSILPTLIEIVLVL YL H Sbjct: 119 VFRHLHSLSLRFHLNRQTGGMTRDIERGTKGISSLISYTLFSILPTLIEIVLVLGYLVLH 178 Query: 181 YDIWFSLITVGALVLYILFTITVTEWRTHFRRSMNELDSHANTRAIDSLLNYETVKYFGN 240 YDIWF++IT ALV YI FT+ VTEWRTHFRR+MN+LDS ANT+AIDSL+NYETVKYFGN Sbjct: 179 YDIWFTVITGVALVSYIAFTVIVTEWRTHFRRTMNDLDSKANTKAIDSLINYETVKYFGN 238 Query: 241 EEFEARRYDEGLQRYERAAVKSQSSLSLLNTGQSAIIALAVTLILWRAIAGVIDGSMTLG 300 E++EARRYDEGL+RYE AAVKSQ+SLSLLNTGQS+IIA+AVTLILWRA GVI G+MTLG Sbjct: 239 EDYEARRYDEGLKRYETAAVKSQTSLSLLNTGQSSIIAIAVTLILWRATQGVISGTMTLG 298 Query: 301 DMVLVNAFMIQLYIPLNFLGVLYREIKQSLADMERLFSLLEENREVADRPGAQSLKTHGA 360 D+VLVNAFMIQLYIPLNFLGV+YREIKQSLADMERLFSLL++NRE+AD+P Q+L T GA Sbjct: 299 DLVLVNAFMIQLYIPLNFLGVIYREIKQSLADMERLFSLLDQNREIADKPDTQALVTDGA 358 Query: 361 ELHFEHVDFSYERNRQILFDVDFKVQAGTTTAVVGHSGSGKSTLSRLLYRFYDVDQGAIR 420 E+ F HVDFSYE NRQILFDVDF + AGTTTAVVGHSGSGKSTLSRLL+RFYDV+QGAI Sbjct: 359 EVRFSHVDFSYEANRQILFDVDFTIAAGTTTAVVGHSGSGKSTLSRLLFRFYDVNQGAIL 418 Query: 421 IDGQDLRNVTQASLRQAIGIVPQDTVLFNDTIEYNIAYGKPGASREQIVAAAKAAYIHDF 480 IDGQD+R+VTQ SLRQAIGIVPQDTVLFNDTI YNIAYGKPGAS IVAAA++AYIH+F Sbjct: 419 IDGQDVRDVTQTSLRQAIGIVPQDTVLFNDTIAYNIAYGKPGASHADIVAAAQSAYIHEF 478 Query: 481 IESLPEGYASMVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQ 540 IESLP+GY +MVGERGLKLSGGEKQRVAIARTLLK PAILIFDEATSALDS++EQAIQ Q Sbjct: 479 IESLPDGYNTMVGERGLKLSGGEKQRVAIARTLLKHPAILIFDEATSALDSKSEQAIQAQ 538 Query: 541 LEEIARERTTLVIAHRLSTIVNAHQILVMDHGRIVERGTHAGLLLAGGLYAQMWLRQQA- 599 L+EIA+ RTTL+IAHRLSTI +A QILV+D GRI+ERGTH LL + G YAQMW+RQQA Sbjct: 539 LKEIAQNRTTLIIAHRLSTIADAAQILVLDKGRIIERGTHMQLLASEGAYAQMWMRQQAR 598 Query: 600 ----------GAEEE 604 GAEEE Sbjct: 599 PDDALASPTDGAEEE 613 >gi|152982656|ref|YP_001351943.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 658 Score = 288 bits (738), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 194/591 (32%), Positives = 312/591 (52%), Gaps = 38/591 (6%) Query: 35 YKWRVMLALAFLVGAKLANVGVPLVLKK--------LVDAMTITPAHPQALLVLPLGLLV 86 Y W A+ +GA + N+ +PL+L LV+A ALLV GL+V Sbjct: 62 YPWHCTFAILAALGAAVFNLLMPLLLGHAVDQAGHLLVNARLGADVVRNALLVTG-GLIV 120 Query: 87 AYGALRLATALFTELRELMFARVTQRAVRTIALQVFRHLHALSLRFHLNRQTGGMSRDIE 146 A+R + T L+ + + Q+ + + + L LS +H TG + I Sbjct: 121 LVCAVR---GILTGLQGYLGETLAQKVGYDLRMAFYEKLQRLSFSYHDKIHTGDL---IA 174 Query: 147 RGTRGVSSLVSYTLFSILPTLIEIVL--VLAYLATHYDIWFSLITVGALVLYILFTITVT 204 RG + + ++ F +L + +L V ++ D+ T+G L L + + Sbjct: 175 RGMLDLEGVRAFLEFGVLRIITLTLLLGVGSWRLLSIDV-----TLGLLALSFVPFVAWN 229 Query: 205 EWRTHFR-----RSMNELDSHANTRAIDSLLNYETVKYFGNEEFEARRYDEGLQRYERAA 259 RT R + + ++ S ++L V+ F + E ++D + A Sbjct: 230 AARTGLRLRVSWQRLQKMMSEMTLNMEENLQGVRVVRAFTSRLHEMSKFD----KISDVA 285 Query: 260 VKSQSSLSLLNTGQSAIIALA----VTLILWRAIAGVIDGSMTLGDMVLVNAFMIQLYIP 315 ++ + G + + LA + L+LW V G++T+G + F+ L P Sbjct: 286 LRLSNQRITERMGNMSAMVLAYYTSMALVLWVGGQRVASGALTVGSLTEFLTFITILQQP 345 Query: 316 LNFLGVLYREIKQSLADMERLFSLLEENREVADRPGAQSLKTHGAELHFEHVDFSY---E 372 L +G++ ++ RLF +L+ + E+ D A LK L FE V F+Y Sbjct: 346 LRQIGMIVNASARATGSGARLFEVLDTDPEIKDAENAHDLKIDKGLLRFESVSFAYGHGP 405 Query: 373 RNRQILFDVDFKVQAGTTTAVVGHSGSGKSTLSRLLYRFYDVDQGAIRIDGQDLRNVTQA 432 +R +L D+ F+V+ G +VG GSGKSTL+ L+ RFY+V G I IDGQDLR ++ + Sbjct: 406 NDRTVLKDISFEVRKGEVLGIVGAPGSGKSTLAHLIPRFYEVSGGRITIDGQDLRALSLS 465 Query: 433 SLRQAIGIVPQDTVLFNDTIEYNIAYGKPGASREQIVAAAKAAYIHDFIESLPEGYASMV 492 SLR A+ +V Q+ LF+ ++ N+AY +P A E+++ AA A IH+ +E LP+GY + V Sbjct: 466 SLRSAVSLVQQENFLFDTSVHNNVAYPEPQAGEERVIEAASVAQIHEHVEQLPKGYTTRV 525 Query: 493 GERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTTLV 552 GERG+ LSGG++QR+ IAR LL P+IL+ D++T+A+D EQ ++ L+ ++ T++ Sbjct: 526 GERGVALSGGQRQRMTIARGLLDQPSILVLDDSTAAIDPATEQRVRAALQSSLKDTATII 585 Query: 553 IAHRLSTIVNAHQILVMDHGRIVERGTHAGLLLAGGLYAQMWLRQQAGAEE 603 IAHRLS++ +A QI+V+D GRIVERGTHA L+ AGG YA++W Q GA+E Sbjct: 586 IAHRLSSLKHADQIIVLDEGRIVERGTHAELIAAGGRYAELWSLQNRGAQE 636 >gi|152981213|ref|YP_001352884.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 595 Score = 283 bits (724), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 203/593 (34%), Positives = 323/593 (54%), Gaps = 32/593 (5%) Query: 18 QRGDWEVVRTLLPYLWTYKWRVMLALAFLVGAKLANVGVPLVLKKLVD-AMTITPAHPQA 76 Q+G +R LL +L YK + +LA L+ A A + +P ++++D H + Sbjct: 10 QKGSIATLRGLLKFLLPYKKQFVLAGIALIVAAAATLAIPYAFRQMIDLGFGANGMHDTS 69 Query: 77 LLVLPLGLLVAYGALRLATALFTELRELMFARVTQRAVRTIALQVFRHLHALSLRFHLNR 136 + +A + A+ T R M + + +R + V+ H+ S +F Sbjct: 70 SINT---YFIALFGVACVLAIATAARFYMVSWLGERVTADVRNAVYSHVVTQSPQFFETT 126 Query: 137 QTGGMSRDIERGTRGVSSLVSYTLFSILPTLIEIVLVLAYLATHYDIWFSLITVGALVLY 196 Q+G + I T + +L+ ++ L L + ++F+ I + +++L Sbjct: 127 QSGEVLSRITTDTTLIQTLIGTSISMALRN------ALLFAGGLVMLFFTSIKLSSIILV 180 Query: 197 IL-FTITVTEWRTHFRRSMNELDSHANTRAIDS------LLN-YETVKYFGNEEFEARRY 248 L F + W F R + L + R D+ +LN TV+ + +E+ EA+R+ Sbjct: 181 TLAFVVLPIVW---FGRRVRTLSRDSQDRVADASALAGEILNAMPTVQAYTHEKIEAKRF 237 Query: 249 DEGLQRYERAAVKSQSSLSLLNTGQSAIIALAVTLILWRAIAGVIDGSMT---LGDMVLV 305 + ++ + A++ + SLL ++ A+ +LW VIDGSM+ LG +L Sbjct: 238 GQTVENAFKTAMRRIRARSLLTMIAILLVFGAIVFVLWLGAHAVIDGSMSGGQLGQFILY 297 Query: 306 NAFMIQLYIPLNFLGVLYREIKQSLADMERLFSLLEENREVADRPGAQSL---KTHGAEL 362 +A + + L + + +++ ERL LL ++ +SL + +GA L Sbjct: 298 SAIVAG---AIGALSEVLGDAQRAAGATERLLELLSVQSPISSPATPRSLPPRRANGAAL 354 Query: 363 HFEHVDFSYERN--RQILFDVDFKVQAGTTTAVVGHSGSGKSTLSRLLYRFYDVDQGAIR 420 + V F Y L ++ +QAG T A+VG SG+GK++L +LL RFYD +G I Sbjct: 355 TLDLVTFHYPSRPLTPALSNLSVSIQAGETVAIVGPSGAGKTSLFQLLLRFYDPQEGVIE 414 Query: 421 IDGQDLRNVTQASLRQAIGIVPQDTVLFNDTIEYNIAYGKPGASREQIVAAAKAAYIHDF 480 +DG D+R + +LR IGIVPQDTV+F+ NI YG+P A+ E+++AAA+ A H+F Sbjct: 415 LDGIDIRELDLHALRNTIGIVPQDTVIFSANAMENIRYGRPEATDEEVIAAARLAAAHEF 474 Query: 481 IESLPEGYASMVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQ 540 IE LPEGY S +GERG++LSGG++QR+AIAR LLK+P +L+ DEATSALD+ +E+ +Q Sbjct: 475 IERLPEGYLSFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQGA 534 Query: 541 LEEIARERTTLVIAHRLSTIVNAHQILVMDHGRIVERGTHAGLLLAGGLYAQM 593 LE RTTLVIAHRL+T+ A +I+VM+HG+IVE GTHA L+ AGGLYA + Sbjct: 535 LEAAMVGRTTLVIAHRLATVQRADRIIVMEHGKIVETGTHASLVAAGGLYASL 587 >gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 705 Score = 271 bits (693), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 186/528 (35%), Positives = 282/528 (53%), Gaps = 12/528 (2%) Query: 83 GLLVAYGALRLATALFTE----LRELMFARVTQRAVRTIALQVFRHLHALSLRFHLNRQT 138 GL+ Y +ALF R + A V++R + + HL LSL + ++T Sbjct: 171 GLVALYLGGLFGSALFAWGLGWARTYILALVSERIGADLRTTTYEHLLRLSLEYFGGKRT 230 Query: 139 GGMSRDIERGTRGVSSLVSYTLFSILPTLIEIVLVLAYLATHYDIWFSLITVGALVLYIL 198 G + I T + +S L ++ I++ A L + + W +L+T+ L +I Sbjct: 231 GDLMTRIGSETDRICVFLSLHLLDFFTDVLMIMMTAAILIS-INPWLALVTLLPLP-FIA 288 Query: 199 FTITVTEWRTHFRRSMNELD---SHANTRAIDSLLNYETVKYFGNEEFEARRYDEGLQRY 255 + I V R R ++D S D++ VK F E+ EA R+ E Sbjct: 289 WMIHVV--RDKLRNGFEKVDRIWSQVTNVLADTIPGIRVVKAFAQEKREAARFREANNHN 346 Query: 256 ERAAVKSQSSLSLLNTGQSAIIALAVTLILWRAIAGVIDGSMTLGDMVLVNAFMIQLYIP 315 + SL + + + + + ++ I V G +T+G + A++ + Y Sbjct: 347 LVVNDRVNKVWSLFSPTVTFLTEIGLLVVWALGIWQVSQGMITVGVLTAFLAYISRFYTR 406 Query: 316 LNFLGVLYREIKQSLADMERLFSLLEENREVADRPGAQSLKTHGAELHFEHVDFSYERNR 375 L+ + + +++ +R+F +L+ V + L ++ + + F Y NR Sbjct: 407 LDSMSRIVSVTQKAATGAKRIFDILDHVSSVPEATNPVHLDKVQGKITIKDIGFRYG-NR 465 Query: 376 QILFDVDFKVQAGTTTAVVGHSGSGKSTLSRLLYRFYDVDQGAIRIDGQDLRNVTQASLR 435 ++ +D + G +VGHSGSGKSTL L+ RFYDV GAI +DG D+R++ R Sbjct: 466 AVIRGLDLTINPGEMIGLVGHSGSGKSTLVNLICRFYDVSAGAIMVDGVDVRSIPIPEYR 525 Query: 436 QAIGIVPQDTVLFNDTIEYNIAYGKPGASREQIVAAAKAAYIHDFIESLPEGYASMVGER 495 + IG+V Q+ LF TI NIAYGKP ASRE I+AAA+AA+ H+FI LP GY SMVGER Sbjct: 526 RNIGLVLQEPFLFFGTIADNIAYGKPDASREDIIAAARAAHAHEFILRLPHGYDSMVGER 585 Query: 496 GLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTTLVIAH 555 G LSGGE+QR++IAR LL DP ILI DEATS++D+ E+ IQ+ L+ + R RTT+ IAH Sbjct: 586 GQTLSGGERQRISIARALLIDPHILILDEATSSVDTTTEREIQKALDNLVRGRTTIAIAH 645 Query: 556 RLSTIVNAHQILVMDHGRIVERGTHAGLLLAGGLYAQMWLRQQAGAEE 603 RLST+ A +I+VMD G+IVE G+H LL G Y +++ QQ AE+ Sbjct: 646 RLSTLRRADRIVVMDRGQIVEVGSHDELLQREGAYYKLYQAQQRQAED 693 >gi|152981121|ref|YP_001351944.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 612 Score = 263 bits (672), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 188/585 (32%), Positives = 313/585 (53%), Gaps = 28/585 (4%) Query: 19 RGDWEVVRTLLPYLWTYKWRVMLALAFLVGAKLANVGVPLVLKKLVDAMTITPAHPQALL 78 R D +VV L Y+ ++W ++ + + + V +P+ ++ VD+ + Sbjct: 24 RYDSQVVSRLWAYIRPHRWALVAVVLTVALFTIVQVLIPVTVRYAVDSAVGNSRYAFN-- 81 Query: 79 VLPLGLLVAYGALRLATALFTELRELMFARVTQRAVRTIALQVFRHLHALSLRFHLNRQT 138 +L + +L + A+ +E + AR+ QR + + +F HL +SL Q Sbjct: 82 ----TILAVFASLIVLNAVSNFFQEWVAARLAQRVIFDLRRAMFNHLQHVSLSILDQTQV 137 Query: 139 GGMSRDIERGTRGVSSLVSYTLFSILPT-----LIEIVLVLAYLATHYDIWFSLITVGAL 193 G R + R V+SL + S+ L+ IV VL + D+ L+T+ L Sbjct: 138 G---RLMSRLQGDVNSLQEFMETSVSAVGDFFLLLGIVAVLLLM----DVKLGLLTLCVL 190 Query: 194 VLYILFTITVTEW-RTHFRRSMNELDSHANTRAIDSLLNYETVKYFGNEEFEARRYD--- 249 + L W R F R+ E S N +++ TV+ E RYD Sbjct: 191 PMMFLVRKIWLPWARKAFTRA-REASSSVNAALAENINGIRTVQENRREIVNFARYDVRA 249 Query: 250 -EGLQRYERAAVKSQSSLSLLNTGQSAIIALAVTLILWRAIAGVIDGSMTLGDMVLVNAF 308 E LQ ++ SQ + ++T + LA+ +++ + V+ G + +G MV Sbjct: 250 IENLQAQIGSSRASQVMMPTVDT----LTGLAMAIVVVVGGSQVVSGQLDVGVMVAFIFC 305 Query: 309 MIQLYIPLNFLGVLYREIKQSLADMERLFSLLEENREVADRPGAQSLKTHGAELHFEHVD 368 + + + P+ L + Y +++++A R+F +L+ ++D+ AQ+L + F HV Sbjct: 306 VQRFFDPIRTLTMQYTVMQRAMASGHRIFEVLDIEVTLSDKKDAQALADVPPAIEFNHVT 365 Query: 369 FSYERNRQILFDVDFKVQAGTTTAVVGHSGSGKSTLSRLLYRFYDVDQGAIRIDGQDLRN 428 F Y ++ +L D++ +Q T A+VG +GSGK++++ L++RFYDV G +++ GQD+R+ Sbjct: 366 FGYRPDQPVLHDLNLHIQPYQTVALVGPTGSGKTSIAALIHRFYDVWDGEVKVGGQDVRD 425 Query: 429 VTQASLRQAIGIVPQDTVLFNDTIEYNIAYGKPGASREQIVAAAKAAYIHDFIESLPEGY 488 +T SL Q +G+V Q+ LF+ TI N+ YG A+REQ++ AAKA HDFI LP+GY Sbjct: 426 LTLDSLGQCVGMVLQEPFLFSGTIADNMRYGLQWATREQVIEAAKAVRAHDFIMRLPDGY 485 Query: 489 ASMVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARER 548 +M+G+RG LS G++Q ++ AR LL P ILI DEAT+ +DS E IQ+ L + + R Sbjct: 486 DTMLGQRGRNLSIGQRQLLSFARALLAKPKILILDEATANIDSFTELEIQRALNVLRKGR 545 Query: 549 TTLVIAHRLSTIVNAHQILVMDHGRIVERGTHAGLLLAGGLYAQM 593 TT++IAHRL+TI +A I+V+ GRIVE+G+H LL GLYA++ Sbjct: 546 TTIIIAHRLATIRDADVIVVLQKGRIVEKGSHDELLKNKGLYAKL 590 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,307,396 Number of extensions: 49032 Number of successful extensions: 352 Number of sequences better than 1.0e-08: 56 Number of HSP's gapped: 293 Number of HSP's successfully gapped: 58 Length of query: 634 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 545 Effective length of database: 891,988 Effective search space: 486133460 Effective search space used: 486133460 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)