BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3761.p (346 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 60 2e-10 gi|152982593|ref|YP_001352341.1| LysR family transcriptional reg... 60 3e-10 gi|152981643|ref|YP_001352264.1| LysR family transcriptional reg... 57 2e-09 gi|152982201|ref|YP_001352928.1| LysR family transcriptional reg... 56 4e-09 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 59.7 bits (143), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 62/127 (48%) Query: 1 MESKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGSDLIDRTSYPTRLTAA 60 ME + L F++ A+++SF+R++E H+TQP S +I+ +E LG L DR +LT A Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTA 60 Query: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGAI 120 GE+F A L +++ L + F V + ++P L+ + I Sbjct: 61 GELFQVYAKRALLEVDAGLDALNELENLKHGRVTFGVLSSFGTFHLPPILADFNKVYPGI 120 Query: 121 NTRLIAL 127 ++ L Sbjct: 121 KITVLRL 127 >gi|152982593|ref|YP_001352341.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 297 Score = 59.7 bits (143), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 57/124 (45%) Query: 1 MESKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGSDLIDRTSYPTRLTAA 60 +E + L FV++AE F R+A H+TQP S+ IQ+LEA LG L RTS LT A Sbjct: 3 IELRQLRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALTPA 62 Query: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGAI 120 G +A +L Q L+R A + A T + +P +L + + Sbjct: 63 GIALLPEAQRILQQTAALPDLMRRAASGASGRLSLAFVSTADYSVLPHFLREFREAYPQV 122 Query: 121 NTRL 124 L Sbjct: 123 EIDL 126 >gi|152981643|ref|YP_001352264.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 321 Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 3/137 (2%) Query: 6 LEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGSDLIDRTSYPTRLTAAGEVFY 65 ++ FV + E S S +AE +QP SRR+Q+LE LG L+ R+++ +LT GE + Sbjct: 15 MQTFVRIVEAGSLSAAAEQLKTSQPTVSRRLQALERSLGLRLLQRSTHVMKLTEDGERCF 74 Query: 66 EQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGAINTRLI 125 +A +L A LRG + + T+ VPH ++ ++ L G + Sbjct: 75 ARAKELLDNWKAMEADLRGTQDEPEGTLRVLVPHAFGQEHL---IAPLADYLGRYPRVSV 131 Query: 126 ALNVHDAVMTIVEGGCD 142 +HD + G D Sbjct: 132 EWMLHDRHPDFIAEGID 148 >gi|152982201|ref|YP_001352928.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 304 Score = 55.8 bits (133), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 74/288 (25%), Positives = 120/288 (41%), Gaps = 31/288 (10%) Query: 6 LEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGSDLIDRTSYPTRLTAAGEVFY 65 LE F+ +AET SFS +A TQ S I ++E + L DRT+ LTAAG+ Sbjct: 8 LETFLLVAETGSFSATARKLGKTQSTVSAAIANIEIDMNLSLFDRTTRKPTLTAAGQKLL 67 Query: 66 EQAVAMLGQINNTRALLR--GKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGAINTR 123 +A A++ + A G A+ T+ +P+ T MP LSA E+ F I+ Sbjct: 68 IEAEAVMERCIALEAHADSLGDSNPAELTLAIEIPYN---TVMPV-LSAFEAEFPFIDLT 123 Query: 124 LIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDASRYDMLTMGTETMRPYARCDRNGKP 183 + D +++G DL + + P P +L+ ++ L M T P Sbjct: 124 IRNPVYGDVSELVLKGEVDLGIAFAQPGYPSELNFTQLGRLVMVHIT-----------HP 172 Query: 184 DYVFPGSSKAPLPFLSYTSNAYLGRMVELMMTDTKRP----LHLAKHYETDMSESLKMMA 239 D+ K S+ ++ R + K P L K ++ + +L M Sbjct: 173 DHPLAKIEKVSF------SDLHIHRHLAFSAHANKLPTTEYLRATKVWQAESYLALIEMV 226 Query: 240 LEGHGVAFLPESSVVREVRNRQLARAD---GPTGEWEVEMEIRLYRER 284 G G A LP + RE+ L P +W V +++ L+++R Sbjct: 227 RAGLGWATLPRQLIHRELEQGDLVELQLEAYPYTDWLVGVDL-LWQKR 273 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.131 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 756,947 Number of extensions: 29582 Number of successful extensions: 118 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 120 Number of HSP's successfully gapped: 4 Length of query: 346 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 262 Effective length of database: 910,473 Effective search space: 238543926 Effective search space used: 238543926 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)