BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3760.p
         (430 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980045|ref|YP_001351968.1| glutamate dehydrogenase (NAD(P)...   724   0.0  
gi|152980652|ref|YP_001353144.1| glutamate dehydrogenase [Janthi...   167   1e-42

>gi|152980045|ref|YP_001351968.1| glutamate dehydrogenase (NAD(P)+)
           [Janthinobacterium sp. Marseille]
          Length = 456

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/425 (84%), Positives = 388/425 (91%)

Query: 6   NHEVPSYLVPHGIGPWGVYLEQIDRVTPHLGSLARWVETLKRPKRMLVVDVPIERDDGTI 65
            H +PSYL P  IG WGVYLEQIDRVTP+LGSLARWVET+KRPKR+L+VDVPIERDDGT+
Sbjct: 32  KHAIPSYLTPPDIGAWGVYLEQIDRVTPYLGSLARWVETMKRPKRILIVDVPIERDDGTV 91

Query: 66  AHFEGYRVQHNTSRGPGKGGVRFHQDVTLSEVMALSAWMTIKNAAVNVPYGGAKGGIRVD 125
           AHFEGYRVQHNTSRGPGKGGVRFHQDV+LSEVMALSAWMTIKNAAVNVPYGGAKGGIRVD
Sbjct: 92  AHFEGYRVQHNTSRGPGKGGVRFHQDVSLSEVMALSAWMTIKNAAVNVPYGGAKGGIRVD 151

Query: 126 PKTLSRGELQRVTRRYTSEIGIIIGPNKDIPAPDVNTDSQIMAWMMDTYSMNQGSTSSGV 185
           PKTLSR EL+R+TRRYTSEI IIIGPNKDIPAPDVNT+ QIMAWMMDTYSMNQGST+SGV
Sbjct: 152 PKTLSRAELERMTRRYTSEINIIIGPNKDIPAPDVNTNEQIMAWMMDTYSMNQGSTASGV 211

Query: 186 VTGKPISLGGSLGRHEATGRGVFVVGCEAAAKRGMDIKEAKVAVQGFGNVGGIAARLFAE 245
           VTGKPISLGGSLGRHEATGRGVFVVGCEAAAKRG++IK A++AVQGFGNVGG+AARLFA 
Sbjct: 212 VTGKPISLGGSLGRHEATGRGVFVVGCEAAAKRGLEIKGARIAVQGFGNVGGVAARLFAA 271

Query: 246 AGSKVVAVQDHVTTVFNGGGLDVPALQAYVAKNGSVKGFEGADEITDRAQFWSVDCDILV 305
           AG+KVVAVQDH  TV    GLD+ ALQAYV ++GSV GF  A+++ D AQFW +DCDILV
Sbjct: 272 AGAKVVAVQDHAATVVRNSGLDIVALQAYVTQHGSVAGFPDAEQLDDAAQFWGLDCDILV 331

Query: 306 PAALEQQITEANANHIKAKIILEGANGPTTPAADDILRDKGVLIVPDVIANAGGVTVSYF 365
           PAALEQQI   NA  +KA I+LEGANGPTTP ADDIL D+G+L+VPDVIANAGGVTVSYF
Sbjct: 332 PAALEQQINRDNAAQVKASIVLEGANGPTTPEADDILHDRGILLVPDVIANAGGVTVSYF 391

Query: 366 EWVQDFSSFFWTEDEINLRLTRIMREAFAAVWQLAEEKNVSLRTAAFIVACTRVLQAREM 425
           EWVQDFSSFFWTEDEIN RLTRIMREAFAAVW LAEEK VSLRTAAFIV CTRVLQAREM
Sbjct: 392 EWVQDFSSFFWTEDEINSRLTRIMREAFAAVWVLAEEKKVSLRTAAFIVGCTRVLQAREM 451

Query: 426 RGLYP 430
           RGLYP
Sbjct: 452 RGLYP 456


>gi|152980652|ref|YP_001353144.1| glutamate dehydrogenase
           [Janthinobacterium sp. Marseille]
          Length = 447

 Score =  167 bits (422), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 174/362 (48%), Gaps = 16/362 (4%)

Query: 42  VETLKRPKRMLVVDVPIERDDGTIAHFEGYRVQHNTSRGPGKGGVRFHQDVTLSEVMALS 101
           +E L   +R++   V    D G +     +R+QH++S GP KGG+RFH  V LS +  L+
Sbjct: 50  LERLVEAERVIQFRVSWVDDRGQVQVNRAFRIQHSSSIGPFKGGMRFHPSVNLSILKFLA 109

Query: 102 AWMTIKNAAVNVPYGGAKGGIRVDPKTLSRGELQRVTRRYTSEIGIIIGPNKDIPAPDVN 161
              T KNA   +P GG KGG   DPK  S GE+ R  +    E+   +G + DIPA D+ 
Sbjct: 110 FEQTFKNALTTLPMGGGKGGSDFDPKGKSDGEVMRFCQALMFELYRHLGSDTDIPAGDIG 169

Query: 162 TDSQ---IMAWMMDTYSMNQGSTSSGVVTGKPISLGGSLGRHEATGRGVFVVGCEAAAKR 218
             ++    MA MM   S    + +S V TGK ++ GGSL R EATG G      E     
Sbjct: 170 VGAREVGYMAGMMKKLS----NDTSAVFTGKSLAYGGSLMRPEATGYGTVYFAEEMLRHS 225

Query: 219 GMDIKEAKVAVQGFGNVGGIAARLFAEAGSKVVAVQDHVTTVFNGGGLDVPALQAYV--- 275
           G       V+V G GNV   A     E  +KVVA+ D   TV++  G +   L+A     
Sbjct: 226 GKSFDGMTVSVSGSGNVAQFAVEKAMELNAKVVAMSDSGGTVYDKDGFNEEKLEAMKELK 285

Query: 276 -AKNGSVKGFEGADEITDRA--QFWSVDCDILVPAALEQQIT-EANANHIKAKIIL--EG 329
             K G V+ F    ++   A  + W +   I +P A + ++  +  A  IK  ++   EG
Sbjct: 286 NVKRGRVEEFAKQFKLQYEAGKRPWHIPVQIALPCATQNELDGDDAATLIKNGVVCVAEG 345

Query: 330 ANGPTTPAADDILRDKGVLIVPDVIANAGGVTVSYFEWVQDFSSFFWTEDEINLRLTRIM 389
           AN P+T  A D      +L  P   +NAGGV  S  E  Q+     W   E++ RL  IM
Sbjct: 346 ANMPSTLEAVDAFIKARILYAPGKASNAGGVATSGLEMSQNALRLSWHHAEVDERLHSIM 405

Query: 390 RE 391
           +E
Sbjct: 406 KE 407


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,084,258
Number of extensions: 48595
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 2
Length of query: 430
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 344
Effective length of database: 903,079
Effective search space: 310659176
Effective search space used: 310659176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)