BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3759.p
         (315 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981667|ref|YP_001351969.1| solute-binding periplasmic prot...   263   8e-72
gi|152981681|ref|YP_001351726.1| ABC transporter substrate bindi...    61   9e-11

>gi|152981667|ref|YP_001351969.1| solute-binding periplasmic protein
           of glutamate/aspartate ABC transporter
           [Janthinobacterium sp. Marseille]
          Length = 300

 Score =  263 bits (673), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 131/278 (47%), Positives = 188/278 (67%)

Query: 17  MSSVHAEEFTGRLKKIKDSGTLTLGVRDSSIPFSYLDDKQSYQGYSIDLCLKAATAIQKK 76
           + +V A++  G LKKIKD+ ++T+G R+SSIPFS+LDDKQ   GY++DLC+K    ++  
Sbjct: 20  LVTVQAQDLGGTLKKIKDTNSITIGYRESSIPFSFLDDKQQPIGYAVDLCMKIVDTVKAD 79

Query: 77  LGLTSLNIKMVPVTSATRIPLIANGTTDISCDSATNNQERWNQVAFSVTEFVTANKFLSK 136
           L L +L + M PVTS+ RIPL+ NGT D+ C S TN++ R  QV+F    FV       K
Sbjct: 80  LKLPNLKVVMQPVTSSNRIPLLRNGTIDLECGSTTNSKVRQEQVSFGPNYFVINVTAAVK 139

Query: 137 KSANLKTLEDLKGKTVVSTSGTSNLKQITALNAERNLGMNILAAKDHAEAFLMVETGRAA 196
           K++N+ +L+DL GKT+ +TSGT+++  +       N+ +  +  KDHAEAFL++   RA 
Sbjct: 140 KTSNINSLDDLNGKTISTTSGTTSVPLLKGYKKTENIQVKEIYGKDHAEAFLLMADDRAV 199

Query: 197 AFVMDDILLSSLAANSKAPGDYQVSAEALSVEPYGLILPKGDKDFKKVVDDALTVVYKGD 256
           AFVMD+ILL+   ANSK PGDY++  E+LS EPY ++L K D  FK +VD ++  V K  
Sbjct: 200 AFVMDNILLAGQIANSKRPGDYKILPESLSQEPYSMMLRKDDPQFKALVDKSIGAVMKSG 259

Query: 257 DIKKIYAKWFQSPIPPKGVNLNVPMSPQLQAVLAKPTD 294
           +I KIYAKWF +PIPPKG+N+N PM+P ++     P+D
Sbjct: 260 EINKIYAKWFTTPIPPKGLNINFPMTPPIEEAFKNPSD 297


>gi|152981681|ref|YP_001351726.1| ABC transporter substrate binding
           protein [Janthinobacterium sp. Marseille]
          Length = 259

 Score = 60.8 bits (146), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 109/266 (40%), Gaps = 16/266 (6%)

Query: 6   LAGVLVGASVLMSSVHAEEFTGRLKKIKDSGTLTLGVRDSSIPFSYLDDKQSYQGYSIDL 65
           L G++ GA +L +   A+     L  I+  G L + V     PF  +    + QG  ID+
Sbjct: 7   LIGLMAGALLLTNVARADA----LDDIQKKGVLRVAVPQDFPPFGSVTTDMTPQGLDIDV 62

Query: 66  CLKAATAIQKKLGLTSLNIKMVPVTSATRIPLIANGTTDISCDSATNNQERWNQVAFSVT 125
               AT I KKLG+    ++++PVTSA RIP +     D+   S   N ER   + FS  
Sbjct: 63  ----ATLIAKKLGV---KVELIPVTSANRIPYLQTKKVDLVISSMGKNPEREKVIDFSAA 115

Query: 126 EFVTANKFLSKKSANLKTLEDLKGKTVVSTSGTSNLKQITALNAERNLGMNILAAKDHAE 185
                N         +    DL GKT+  T G+    +++ +  E      I   +D+  
Sbjct: 116 YAPFFNGVFGPADQKVAAPADLAGKTIGVTRGSVEDLELSKIAPE---SATIKRYEDNNG 172

Query: 186 AFLMVETGRAAAFVMDDILLSSLAANSKAPGDYQVSAEALSVEPYGLILPKGDKDFKKVV 245
                 + +       +++ +++ A  K P     +   +   P  + L KG++   + V
Sbjct: 173 TISSFLSNQVQLVATGNVIAAAIIA--KNPPKKPETKFLIKNSPCSIGLNKGEEKLLEKV 230

Query: 246 DDALTVVYKGDDIKKIYAKWFQSPIP 271
           +  +    K   +  +  KW   P+P
Sbjct: 231 NAIIAQAKKDGSLNTLTEKWLGLPLP 256


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.313    0.129    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 633,627
Number of extensions: 22442
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 232
Effective length of database: 914,170
Effective search space: 212087440
Effective search space used: 212087440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)