BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3758.p (249 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type tr... 258 2e-70 gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate tr... 86 2e-18 gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport s... 79 2e-16 gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport s... 59 3e-10 >gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type transport system permease protein [Janthinobacterium sp. Marseille] Length = 243 Score = 258 bits (660), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 140/241 (58%), Positives = 174/241 (72%), Gaps = 4/241 (1%) Query: 6 NWGIFWEMSPDGI-PYIDTLLAGLKWTLATAACAWIMALILGTIFGTLRTTTKPWVVRIS 64 + GIF E PDG ++++LL+GL WTLA A AWI A ++G+I G RT+ K W+VR+ Sbjct: 2 DLGIFLEQVPDGDGTWLESLLSGLGWTLAVALFAWIFAFVVGSIVGVGRTSEKRWLVRLG 61 Query: 65 NGYVELFRNIPLLVQMFLWYFVMPELLPTAMGDWIKGLP--NASFVTATLALGFFTSSRV 122 YVELFRNIPLLVQ F+WYFV+P L+P A+ W+ L FVTA + LGFFTSSR+ Sbjct: 62 GAYVELFRNIPLLVQFFVWYFVVPGLVP-AVKAWVITLDPTEHQFVTAVVCLGFFTSSRI 120 Query: 123 AVQVTTGIQALPRGQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSSVA 182 A QV +GIQALPRGQR AG ALGLT QTYRYVLLPMA+RIIIP LT+E +IKN++VA Sbjct: 121 AEQVRSGIQALPRGQRNAGYALGLTTAQTYRYVLLPMAYRIIIPPLTSELMNLIKNTAVA 180 Query: 183 LTIGLVELTAATYSMREFTFQTFEALTGATVIYVIISVIALFMARLLEKVTAVPGYITGG 242 +IGLVEL T M E TF+ FEA AT+IYV+I++ A + L+E+ AVPGYI GG Sbjct: 181 YSIGLVELFFRTREMGEMTFRYFEAFGAATLIYVVIAMTANRLMALVERRLAVPGYIAGG 240 Query: 243 S 243 Sbjct: 241 K 241 >gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate transport system permease protein [Janthinobacterium sp. Marseille] Length = 228 Score = 86.3 bits (212), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 112/220 (50%), Gaps = 10/220 (4%) Query: 19 PYIDTLLAGLKWTLATAACAWIMALILGTIFGTLRTTTKPWVVRISNGYVELFRNIPLLV 78 PY LLAGL++TL A +I GT+ R ++ + I+ YV L R+IPLL+ Sbjct: 14 PY---LLAGLQYTLQLTVVAAFGGVIFGTLLAMARLSSNKTLSLIAAAYVNLMRSIPLLL 70 Query: 79 QMFLWYFVMPELLPTAMGDWIK---GLPNASFVTATLALGFFTSSRVAVQVTTGIQALPR 135 +F +YF+MP +L T G G ++++T + F ++ + GIQ++ + Sbjct: 71 VIFWFYFLMPIVLQTITGSERPVQLGADRSAYITFIM----FEAAYFCEIMRAGIQSISK 126 Query: 136 GQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSSVALTIGLVELTAATY 195 GQ AG ALGLT Q+ + V+LP AFR ++P L + + ++ S+ + + + A Sbjct: 127 GQVNAGYALGLTYRQSMQLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFVGAAV 186 Query: 196 SMREFTFQTFEALTGATVIYVIISVIALFMARLLEKVTAV 235 + + + E ++Y ++S + + L+K A+ Sbjct: 187 KVAQRDSRVVEMYLFVAIVYFVLSFALSTLVKQLQKRFAI 226 >gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 218 Score = 79.3 bits (194), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 102/198 (51%), Gaps = 11/198 (5%) Query: 22 DTLLAGLKWTLATAACAWIMALILGTIFGTLRTTTKPWVVRISNGYVELFRNIPLLVQMF 81 + LLAG +WT+ + +++ +LG + RT+ + ++ Y+E+F+ PLL+Q+F Sbjct: 12 NLLLAG-RWTVVLSLVTFLLGGMLGLLILFFRTSKSGALRNVARIYIEIFQGTPLLMQLF 70 Query: 82 LWYFVMPELLPTAMGDWIKGLPNASFVTATLALGFFTSSRVAVQVTTGIQALPRGQRMAG 141 L +F G + G+ +++ A L L +++S +A ++A+PRGQ A Sbjct: 71 LVFF----------GIALFGIEVPAWLAAGLTLTLWSASFLAEIWRGCVEAIPRGQWEAS 120 Query: 142 AALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSSVALTIGLVELTAATYSMREFT 201 + L + VQ RYV+LP A RI +P IIK ++V IG VEL+ A + T Sbjct: 121 SVLAMNYVQQMRYVILPQALRIALPPTIGFSVQIIKGTAVTSIIGFVELSKAATVITNAT 180 Query: 202 FQTFEALTGATVIYVIIS 219 F F A + Y I+ Sbjct: 181 FMPFTVYAAAGLFYFILC 198 >gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 223 Score = 58.9 bits (141), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 90/166 (54%), Gaps = 11/166 (6%) Query: 48 IFGTLRTTTKP-WVVRISNGYVELFRNIPLLVQMFLWYFVMPELLPTAMGDWIKGLPNAS 106 IFG T +P W+ + + YVEL RN P L+Q+F +F +P ++G I + A+ Sbjct: 40 IFGAWARTQEPRWLRPVVSAYVELIRNTPFLIQLFFIFFGLP-----SIGVQITEM-QAA 93 Query: 107 FVTATLALGFFTSSRVAVQVTTGIQALPRGQRMAGAALGLTPVQTYRYVLLPMAFRIIIP 166 + + LG +++ + G+ A+ RGQ A +L +T VQ +R+++L A + I P Sbjct: 94 ILAMVINLGAYSTE----IIRAGVVAVARGQIEAALSLSMTRVQIFRHIILRPALQKIWP 149 Query: 167 ALTNEFAAIIKNSSVALTIGLVELTAATYSMREFTFQTFEALTGAT 212 AL+++ ++ S+V I + EL+ A ++ F+ FEA AT Sbjct: 150 ALSSQIVIVMLGSAVCSQIAVEELSFAANFIQGRNFRAFEAYLIAT 195 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.326 0.138 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 587,505 Number of extensions: 22890 Number of successful extensions: 123 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 120 Number of HSP's successfully gapped: 4 Length of query: 249 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 168 Effective length of database: 921,564 Effective search space: 154822752 Effective search space used: 154822752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)