BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3757.p (231 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate tr... 301 2e-83 gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type tr... 99 3e-22 gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport s... 74 9e-15 gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport s... 56 2e-09 >gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate transport system permease protein [Janthinobacterium sp. Marseille] Length = 228 Score = 301 bits (772), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 154/229 (67%), Positives = 185/229 (80%), Gaps = 2/229 (0%) Query: 3 SNFDFDVIQRSWVYLFTTGLKFTLILTFSAMAGGIILGTLLAMMRLSSNKPLSFIATTYV 62 ++ DF++I R+W YL GL++TL LT A GG+I GTLLAM RLSSNK LS IA YV Sbjct: 2 ADLDFEIITRTWPYLLA-GLQYTLQLTVVAAFGGVIFGTLLAMARLSSNKTLSLIAAAYV 60 Query: 63 NLIRSIPLVLVIFWFYFLVPFIGAWIIGASEPIQVGAFESALITFILFEAAYYCEIMRSG 122 NL+RSIPL+LVIFWFYFL+P + I G+ P+Q+GA SA ITFI+FEAAY+CEIMR+G Sbjct: 61 NLMRSIPLLLVIFWFYFLMPIVLQTITGSERPVQLGADRSAYITFIMFEAAYFCEIMRAG 120 Query: 123 IQSIPRGQVFAGYAIGMNYWQMMGNVVLPQAFRNMTPILLTQTIVLFQDVSLVYVLGSVP 182 IQSI +GQV AGYA+G+ Y Q M VVLPQAFRNM PILLTQTIVLFQDVSLV +L +V Sbjct: 121 IQSISKGQVNAGYALGLTYRQSMQLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLL-NVT 179 Query: 183 DFVTSASKIAQRDGRLVEMYLFVAVVYFILSFSLSQLVKRFQKKIAIIR 231 DFV +A K+AQRD R+VEMYLFVA+VYF+LSF+LS LVK+ QK+ AIIR Sbjct: 180 DFVGAAVKVAQRDSRVVEMYLFVAIVYFVLSFALSTLVKQLQKRFAIIR 228 >gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type transport system permease protein [Janthinobacterium sp. Marseille] Length = 243 Score = 98.6 bits (244), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 124/221 (56%), Gaps = 7/221 (3%) Query: 13 SWVYLFTTGLKFTLILTFSAMAGGIILGTLLAMMRLSSNKPLSFIATTYVNLIRSIPLVL 72 +W+ +GL +TL + A ++G+++ + R S + L + YV L R+IPL++ Sbjct: 16 TWLESLLSGLGWTLAVALFAWIFAFVVGSIVGVGRTSEKRWLVRLGGAYVELFRNIPLLV 75 Query: 73 VIFWFYF----LVPFIGAWIIGASEPIQVGAFESALITFILFEAAYYCEIMRSGIQSIPR 128 F +YF LVP + AW+I +P + F +A++ F ++ E +RSGIQ++PR Sbjct: 76 QFFVWYFVVPGLVPAVKAWVI-TLDPTE-HQFVTAVVCLGFFTSSRIAEQVRSGIQALPR 133 Query: 129 GQVFAGYAIGMNYWQMMGNVVLPQAFRNMTPILLTQTIVLFQDVSLVYVLGSVPDFVTSA 188 GQ AGYA+G+ Q V+LP A+R + P L ++ + L ++ ++ Y +G V F + Sbjct: 134 GQRNAGYALGLTTAQTYRYVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGLVELFFRT- 192 Query: 189 SKIAQRDGRLVEMYLFVAVVYFILSFSLSQLVKRFQKKIAI 229 ++ + R E + ++Y +++ + ++L+ ++++A+ Sbjct: 193 REMGEMTFRYFEAFGAATLIYVVIAMTANRLMALVERRLAV 233 >gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 218 Score = 73.6 bits (179), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 91/180 (50%), Gaps = 10/180 (5%) Query: 47 RLSSNKPLSFIATTYVNLIRSIPLVLVIFWFYFLVPFIGAWIIGASEPIQVGAFESALIT 106 R S + L +A Y+ + + PL++ +F +F + G I+V A+ +A +T Sbjct: 42 RTSKSGALRNVARIYIEIFQGTPLLMQLFLVFFGIALFG---------IEVPAWLAAGLT 92 Query: 107 FILFEAAYYCEIMRSGIQSIPRGQVFAGYAIGMNYWQMMGNVVLPQAFRNMTPILLTQTI 166 L+ A++ EI R +++IPRGQ A + MNY Q M V+LPQA R P + ++ Sbjct: 93 LTLWSASFLAEIWRGCVEAIPRGQWEASSVLAMNYVQQMRYVILPQALRIALPPTIGFSV 152 Query: 167 VLFQDVSLVYVLGSVPDFVTSASKIAQRDGRLVEMYLFVAVVYFILSFSLSQLVKRFQKK 226 + + ++ ++G V + +A+ I +Y + YFIL + LS+ + ++K Sbjct: 153 QIIKGTAVTSIIGFV-ELSKAATVITNATFMPFTVYAAAGLFYFILCWPLSRYSQFLERK 211 >gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 223 Score = 56.2 bits (134), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 85/160 (53%), Gaps = 10/160 (6%) Query: 44 AMMRLSSNKPLSFIATTYVNLIRSIPLVLVIFWFYFLVPFIGAWIIGASEPIQVGAFESA 103 A R + L + + YV LIR+ P ++ +F+ +F +P IG +Q+ ++A Sbjct: 43 AWARTQEPRWLRPVVSAYVELIRNTPFLIQLFFIFFGLPSIG---------VQITEMQAA 93 Query: 104 LITFILFEAAYYCEIMRSGIQSIPRGQVFAGYAIGMNYWQMMGNVVLPQAFRNMTPILLT 163 ++ ++ AY EI+R+G+ ++ RGQ+ A ++ M Q+ +++L A + + P L + Sbjct: 94 ILAMVINLGAYSTEIIRAGVVAVARGQIEAALSLSMTRVQIFRHIILRPALQKIWPALSS 153 Query: 164 QTIVLFQDVSLVYVLGSVPDFVTSASKIAQRDGRLVEMYL 203 Q +++ ++ + +V + +A+ I R+ R E YL Sbjct: 154 QIVIVMLGSAVCSQI-AVEELSFAANFIQGRNFRAFEAYL 192 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.333 0.144 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 492,398 Number of extensions: 19282 Number of successful extensions: 77 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 72 Number of HSP's successfully gapped: 4 Length of query: 231 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 151 Effective length of database: 925,261 Effective search space: 139714411 Effective search space used: 139714411 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 128 (53.9 bits)