BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3756.p (242 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type tr... 444 e-126 gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 246 1e-66 gi|152981146|ref|YP_001354830.1| cell division ATP-binding prote... 147 6e-37 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 140 6e-35 gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 139 2e-34 >gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 444 bits (1142), Expect = e-126, Method: Compositional matrix adjust. Identities = 210/240 (87%), Positives = 227/240 (94%) Query: 1 MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60 MIEL+ VSKWYG+FQVLTDC+T V KGDVVVVCGPSGSGKSTLIKTVNGLEPFQ+G ITV Sbjct: 1 MIELDKVSKWYGNFQVLTDCTTQVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQQGKITV 60 Query: 61 DGVSVGDPKTNLSKLRARIGMVFQNFELFPHLSIRENLTIGQIKVLGRSKEEATEKGLKY 120 DG+SVGDPKTNLS LR+RIGMVFQNFELFPHLSI ENLT+ Q+KVL RS +ATE+GLKY Sbjct: 61 DGISVGDPKTNLSSLRSRIGMVFQNFELFPHLSISENLTLAQVKVLKRSLPDATERGLKY 120 Query: 121 LDRVGLLAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMV 180 LDRVGL+AHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMV Sbjct: 121 LDRVGLIAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMV 180 Query: 181 GLAQEGMTMMVVTHEMGFARKVANRVVFMDKGVVVEDCAKDEFFASPRSERARDFLAKII 240 GLAQEGMTMMVVTHEMGFA+KVANRV+FMDKG++VEDC KDEFF + RS+RARDFLAKII Sbjct: 181 GLAQEGMTMMVVTHEMGFAKKVANRVIFMDKGLIVEDCTKDEFFGTTRSDRARDFLAKII 240 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 246 bits (628), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 124/236 (52%), Positives = 168/236 (71%) Query: 1 MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60 +I ++NV K YGS QVL V+ G+V+ + G SGSGKSTL++ +NGLE +G+I+V Sbjct: 3 LIAIDNVKKSYGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSISV 62 Query: 61 DGVSVGDPKTNLSKLRARIGMVFQNFELFPHLSIRENLTIGQIKVLGRSKEEATEKGLKY 120 G +G + L LR ++GM+FQ F LFPHLS+ N+ I + V G S+++A +K Sbjct: 63 AGSHLGKSELELRNLRLKVGMIFQQFNLFPHLSVGRNIMISPMIVKGVSEKDARALAMKN 122 Query: 121 LDRVGLLAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMV 180 L++VGL D FP QLSGGQQQRVAIARALSM+P A+L DE TSALDPE++NEVL+V+ Sbjct: 123 LEKVGLSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELVNEVLNVVR 182 Query: 181 GLAQEGMTMMVVTHEMGFARKVANRVVFMDKGVVVEDCAKDEFFASPRSERARDFL 236 GLA EGMT+++VTHEM FAR+V +RVVFM +G V E A ++ FA+P + + FL Sbjct: 183 GLAHEGMTLIMVTHEMRFAREVCDRVVFMHQGKVHEIGAPEDIFANPATPELKQFL 238 >gi|152981146|ref|YP_001354830.1| cell division ATP-binding protein FtsE [Janthinobacterium sp. Marseille] Length = 227 Score = 147 bits (371), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 88/218 (40%), Positives = 128/218 (58%), Gaps = 4/218 (1%) Query: 1 MIELNNVSKWYG-SFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTIT 59 MIE + VSK Y + L+D S SV KG++V + GPSG+GKSTL+K + +E +G++ Sbjct: 1 MIEFHQVSKKYTQNVTALSDISLSVGKGELVFLAGPSGAGKSTLLKLIAAMERPSEGSVI 60 Query: 60 VDGVSVGDPKTN-LSKLRARIGMVFQNFELFPHLSIRENLTIGQIKVLGRSKEEATEKGL 118 V G + KT+ L LR +G++FQ L S+ N+ + I V G S+ +A + Sbjct: 61 VSGHDISRIKTSGLPYLRRNLGLIFQQQRLLADRSVLANVMLPLI-VCGASRPDAERRAR 119 Query: 119 KYLDRVGLLAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDV 178 LD+VGLL P LSGG+QQRVAIARA+ P +L DEPT+ LD N+VLD Sbjct: 120 AALDKVGLLDMASSGPLTLSGGEQQRVAIARAIVNRPQIILADEPTANLDRAAANKVLDA 179 Query: 179 MVGLAQEGMTMMVVTHEMGFARKVANRVVFMDKGVVVE 216 + G+T ++ TH+ F A RV+++D G ++E Sbjct: 180 LKAFHSVGVTCLISTHDEQFL-DTATRVIYLDHGRIIE 216 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 140 bits (354), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 138/243 (56%), Gaps = 10/243 (4%) Query: 2 IELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITVD 61 IE+ N+ K +G+F L + S G++ + GPSG GK+TL++ + GLE G + +D Sbjct: 3 IEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 62 GVSVGDPKTNLSKLRAR-IGMVFQNFELFPHLSIRENLTIG---QIKVLGRSKEEATEKG 117 G + +R R +G VFQ++ LF H+++ EN+ G + S+ + EK Sbjct: 63 G-----EDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESQIKEKV 117 Query: 118 LKYLDRVGLLAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLD 177 K L+ V L D++P QLSGGQ+QR+A+ARAL+++P +L DEP ALD ++ E+ Sbjct: 118 TKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 Query: 178 VMVGLAQE-GMTMMVVTHEMGFARKVANRVVFMDKGVVVEDCAKDEFFASPRSERARDFL 236 + L + +T + VTH+ A +VA+++V M+KG V + A + + +P S FL Sbjct: 178 WLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVYGFL 237 Query: 237 AKI 239 + Sbjct: 238 GNV 240 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 139 bits (349), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 137/237 (57%), Gaps = 6/237 (2%) Query: 1 MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60 ++E+ N+++ +G V+ + S S++ G+ + GPSG GK+TL++ + G + G I + Sbjct: 3 LLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQILL 62 Query: 61 DGVSVGDPKTNLSKLRARIGMVFQNFELFPHLSIRENLTIGQIKVLGRSKEEATEKGLKY 120 DGV + T + + + VFQN+ LFPH+++ N+ +++ K E +K + Sbjct: 63 DGVDL----TGVPPEQRPVRTVFQNYALFPHMTVGGNIAF-PLEMANTPKAEIQKKVDEA 117 Query: 121 LDRVGLLAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMV 180 L+ V L ++P +LSGGQ+QRV+IARAL P +L DEP SALD ++ ++ ++ Sbjct: 118 LEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELI 177 Query: 181 GLAQE-GMTMMVVTHEMGFARKVANRVVFMDKGVVVEDCAKDEFFASPRSERARDFL 236 L +E G+T + VTH+ A +++R+ M+KG V + ++ PRS DF+ Sbjct: 178 NLQKEVGITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSYPRSRFVADFI 234 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 524,532 Number of extensions: 20656 Number of successful extensions: 290 Number of sequences better than 1.0e-08: 63 Number of HSP's gapped: 179 Number of HSP's successfully gapped: 67 Length of query: 242 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 161 Effective length of database: 921,564 Effective search space: 148371804 Effective search space used: 148371804 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)