BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3755.p
         (344 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980376|ref|YP_001351973.1| dihydroorotase [Janthinobacteri...   596   e-172

>gi|152980376|ref|YP_001351973.1| dihydroorotase [Janthinobacterium
           sp. Marseille]
          Length = 352

 Score =  596 bits (1537), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 278/340 (81%), Positives = 307/340 (90%)

Query: 5   LTITRPDDWHLHLRDGATMQDVLPHTARQFARAIVMPNLKPPVTTTEQAGAYRQRILAAL 64
           +TITRPDDWHLHLRDGAT+  VLP TARQFARAIVMPNLKPPVTTT QA AYR RILAAL
Sbjct: 13  ITITRPDDWHLHLRDGATIASVLPDTARQFARAIVMPNLKPPVTTTAQALAYRDRILAAL 72

Query: 65  PAGMSFEPLMVLYLTDNTPPDEIRRAKDSGFVKAVKLYPAGATTNSDAGVTDLSKCYKTL 124
           PAGMSFEPLMVLYLTDNTPP+EI+RAK+SG V AVKLYPAGATTNSDAGV+DL+KCYKTL
Sbjct: 73  PAGMSFEPLMVLYLTDNTPPEEIQRAKESGAVHAVKLYPAGATTNSDAGVSDLTKCYKTL 132

Query: 125 EVLQEVGMPFLVHGEVTDPEIDLFDREAVFIDRIMKPLRQAMPELKVVFEHITTKEAADY 184
           E++Q+VGMPFLVHGEVTDP ID+FDREAVFIDR+MKPLR+ MPELKVVFEHITTK+AA Y
Sbjct: 133 EMMQKVGMPFLVHGEVTDPAIDIFDREAVFIDRVMKPLRRDMPELKVVFEHITTKDAAQY 192

Query: 185 VLAGEGPTAATITAHHLLFNRNEMFKGGIRPHYYCLPVLKRETHRKALVAAATSGNDKFF 244
           V   +G   ATITAHHLL+NRNE+FKGGIRPHYYCLPVLKRE HR+ALVAAA SG++KFF
Sbjct: 193 VAEADGHVGATITAHHLLYNRNELFKGGIRPHYYCLPVLKREIHRQALVAAAISGSNKFF 252

Query: 245 LGTDSAPHAKGVKEHACGCAGCYTALHALELYAQAFDSAGALDKFEAFASFNGPDFYNLP 304
           LGTDSAPHAKG+KEHACGCAGCYTALHA+ELY QAFD A ALDK E FASFNGPDFY LP
Sbjct: 253 LGTDSAPHAKGLKEHACGCAGCYTALHAMELYTQAFDQADALDKLEQFASFNGPDFYQLP 312

Query: 305 RNTGTVSLKRETWSIPAELPMGEATVVPLSAGEQIHWKMV 344
           RNTGT++L+RE W IPAE+P+G  T+VPL+ GE I WK V
Sbjct: 313 RNTGTITLQREEWQIPAEVPLGNTTLVPLNGGETIGWKFV 352


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 845,729
Number of extensions: 35323
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 260
Effective length of database: 910,473
Effective search space: 236722980
Effective search space used: 236722980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)