BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3752.p
         (142 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980317|ref|YP_001351984.1| 50S ribosomal protein L13 [Jant...   274   2e-75

>gi|152980317|ref|YP_001351984.1| 50S ribosomal protein L13
           [Janthinobacterium sp. Marseille]
          Length = 142

 Score =  274 bits (700), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 131/142 (92%), Positives = 136/142 (95%)

Query: 1   MKTFSAKAHEVQREWFVIDATDLVLGRVASEVALRLRGKHKPEFTPHVDTGDFIVVVNAG 60
           MKTFSAK HEVQR+WFVIDATD VLGRVASEVALRLRGKHKPEFTPHVDTGDFIVV+NAG
Sbjct: 1   MKTFSAKGHEVQRDWFVIDATDKVLGRVASEVALRLRGKHKPEFTPHVDTGDFIVVINAG 60

Query: 61  KLRVTGTKATEKTYFRHSGYPGGIYETNFLKMQQRFPGRALEKAVKGMLPKGPLGYAMIK 120
           KLRVTGTKATEKTY+RHSGYPGGIYETNFLKMQQRFPGRALEKAVKGMLPKGPLGYAMIK
Sbjct: 61  KLRVTGTKATEKTYYRHSGYPGGIYETNFLKMQQRFPGRALEKAVKGMLPKGPLGYAMIK 120

Query: 121 KLKVYADGNHPHSAQQPKPLAL 142
           KLKVYA+  HPH+AQQPK L L
Sbjct: 121 KLKVYAEATHPHAAQQPKALEL 142


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 348,100
Number of extensions: 13677
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 1,221,021
Length adjustment: 75
Effective length of query: 67
Effective length of database: 943,746
Effective search space: 63230982
Effective search space used: 63230982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)