BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3750.p
         (345 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979967|ref|YP_001351986.1| N-acetyl-gamma-glutamyl-phospha...   633   0.0  

>gi|152979967|ref|YP_001351986.1| N-acetyl-gamma-glutamyl-phosphate
           reductase [Janthinobacterium sp. Marseille]
          Length = 345

 Score =  633 bits (1632), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 295/345 (85%), Positives = 330/345 (95%)

Query: 1   MIKVGIVGGTGYTGVELLRIFATHPQARVQAVTSRKEDGMPVAEMYPSLRGRVDVAFSSP 60
           MIKVGIVGGTGYTGVELLR+ ATHP+ ++ A+TSRKEDG+PVA+M+PSLRGRVD+AFS+P
Sbjct: 1   MIKVGIVGGTGYTGVELLRLLATHPEVKLTAITSRKEDGLPVADMFPSLRGRVDLAFSAP 60

Query: 61  DKAQLNDCDVVFFATPHGVAMAQAPELVAAGVKVIDLAADFRMQDVAAFEKWYKLPHSCT 120
           +KA+L +CDVVFFATPHGVAMAQAPEL+AAGVKVIDLAADFR+QD+AAFEKWYK+PHSC 
Sbjct: 61  EKAKLTECDVVFFATPHGVAMAQAPELLAAGVKVIDLAADFRLQDIAAFEKWYKIPHSCP 120

Query: 121 ELLKEAAYGLPELNREAIRKARVVGNPGCYPTTMQLGFAPLLKAGVIDASHLIADCKSGV 180
           ELLKEAAYGL ELNR+AIRKAR+VGNPGCYPTTMQLG APLL+AGVIDASHLIADCKSGV
Sbjct: 121 ELLKEAAYGLVELNRDAIRKARIVGNPGCYPTTMQLGLAPLLQAGVIDASHLIADCKSGV 180

Query: 181 SGAGRKAELSLLFSEASDNFKAYGVSGHRHSPETIERLSHLTSDKVGLLFTPHLVPMIRG 240
           SGAGRKAE++ LFSEA DNFKAYGVSGHRHSPET+ERL  LT DKVGLLFTPHLVPMIRG
Sbjct: 181 SGAGRKAEVATLFSEAGDNFKAYGVSGHRHSPETLERLRLLTKDKVGLLFTPHLVPMIRG 240

Query: 241 MHSTLYARLTRDIDNAALQALFEEAYKDEPFVDVLPFGSHPETRTTRASNMLRLAVHRPD 300
           MHSTLYARLT+DIDNAALQALFE+AY +EPF+DV+PFGSHPETR+TRASNMLR+A+HRPD
Sbjct: 241 MHSTLYARLTKDIDNAALQALFEKAYGNEPFIDVMPFGSHPETRSTRASNMLRIALHRPD 300

Query: 301 NGDTVVVLVVQDNLVKGASGQAVQCMNLMFGLEETSGLQQVPVLP 345
           +GDTVVVLVVQDNLVKGASGQAVQCMNLMFGL+ET+GL  +PVLP
Sbjct: 301 DGDTVVVLVVQDNLVKGASGQAVQCMNLMFGLDETAGLMHIPVLP 345


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 765,900
Number of extensions: 31125
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 261
Effective length of database: 910,473
Effective search space: 237633453
Effective search space used: 237633453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)