BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3749.p
         (237 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982612|ref|YP_001351987.1| hypothetical protein mma_0297 [...   233   6e-63

>gi|152982612|ref|YP_001351987.1| hypothetical protein mma_0297
           [Janthinobacterium sp. Marseille]
          Length = 251

 Score =  233 bits (595), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 116/236 (49%), Positives = 164/236 (69%), Gaps = 5/236 (2%)

Query: 2   SISAPKMTIKRHLPLPLLILLWAAVVAVGAAAAVWTYQLGRNNLPGLHGDAGDASEQIEQ 61
           SISAP+MTIK HLP PL  +  A VV +G A A+W Y LGR+   G     G  S Q+ +
Sbjct: 21  SISAPRMTIKNHLPWPLRAVFIAIVVGLGGAMAMWAYDLGRS-FTGFK--PGATSAQLAE 77

Query: 62  LSEQVKKLTAENERLQSASNASQNELKIAQTAQATLAGQVKNLEAENNRQKEDLAFFDSL 121
           + EQ+++ +AE ++ ++  NA++++L I ++ QA L+ Q+K LE+EN + KEDLAFF+SL
Sbjct: 78  VQEQLQQTSAERDKFETTVNAAESQLNIERSLQAQLSRQIKTLESENAKLKEDLAFFESL 137

Query: 122 LPTNLGAPGITIQRFKAEQAAPNQLRYRVLVMQGGGGTQQFAGNLQLSVNIVQGGKGVTI 181
           LPT+ GA GITI+R KAE   P QLRYR+L+MQGG     F GN QL V +VQ GK   +
Sbjct: 138 LPTDTGAQGITIRRLKAEMVEPAQLRYRLLLMQGGKAGHDFTGNYQLIVTLVQDGKSAMM 197

Query: 182 NFPESNAADQARYRLAFKYYQRVEGLLTIPEGATVKSVAVRVLDRGQVRAQQSLDL 237
            FP+ +  D  +++L+F++YQR+EG   IP GA VKSV ++VL++G +RAQQS +L
Sbjct: 198 TFPKPDEVD--KFKLSFRHYQRIEGEFAIPAGAVVKSVQIKVLEKGSLRAQQSSNL 251


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.130    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 455,790
Number of extensions: 17271
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 157
Effective length of database: 925,261
Effective search space: 145265977
Effective search space used: 145265977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)