BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3748.p
         (131 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981914|ref|YP_001351988.1| hypothetical protein mma_0298 [...   178   8e-47

>gi|152981914|ref|YP_001351988.1| hypothetical protein mma_0298
           [Janthinobacterium sp. Marseille]
          Length = 133

 Score =  178 bits (452), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 90/126 (71%), Positives = 109/126 (86%), Gaps = 2/126 (1%)

Query: 1   MFTRKTKSTIDSLIGMSTNITGDVGFKGGLRIDGAITGNINAEAGQPSVLVISEHAKVVG 60
           MF+RK KSTIDSLIG ST I+G+V FKGGLRIDG + G++ A+A + S+LVISEHA+V G
Sbjct: 1   MFSRKAKSTIDSLIGASTIISGNVHFKGGLRIDGCVKGDVIAQADEISMLVISEHARVEG 60

Query: 61  EIRAAHLIVNGEIIGDVHSSELLELQPKARITGNVFYKALEMHGGALVSGKLSHDQQVET 120
           E+R AHL+VNGEI+G V SSELLELQPKARITG+V YKALEMHGGA+VSGKL+H  +V+ 
Sbjct: 61  EVRVAHLLVNGEIVGPVFSSELLELQPKARITGDVNYKALEMHGGAVVSGKLTH--EVDE 118

Query: 121 PLLKLA 126
           P+LKLA
Sbjct: 119 PILKLA 124


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.133    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 303,711
Number of extensions: 12041
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 1,221,021
Length adjustment: 73
Effective length of query: 58
Effective length of database: 951,140
Effective search space: 55166120
Effective search space used: 55166120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 124 (52.4 bits)