BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3746.p (427 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979840|ref|YP_001354649.1| glutamate-1-semialdehyde 2,1-am... 695 0.0 gi|152980209|ref|YP_001352373.1| acetylornithine transaminase pr... 125 4e-30 gi|152980626|ref|YP_001351837.1| ornithine aminotransferase [Jan... 110 2e-25 gi|152979966|ref|YP_001354181.1| beta alanine--pyruvate transami... 94 2e-20 gi|152980665|ref|YP_001351810.1| adenosylmethionine--8-amino-7-o... 83 3e-17 >gi|152979840|ref|YP_001354649.1| glutamate-1-semialdehyde 2,1-aminomutase [Janthinobacterium sp. Marseille] Length = 432 Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/416 (79%), Positives = 366/416 (87%) Query: 1 MTKTNASLFARAQQSTPGGVNSPVRAFRSVGGTPRFIERAEGPWFWDAEGKRYIDYIGSW 60 M+ N LFARAQ STPGGVNSPVRAFRSVGGTPRFI +AEGP+FWDA+ +RYIDYIGSW Sbjct: 1 MSSKNDQLFARAQLSTPGGVNSPVRAFRSVGGTPRFITKAEGPYFWDADDRRYIDYIGSW 60 Query: 61 GPAIVGHAHPEVVKAVQQAAARGLSFGAPTEAEIEMAEEIIKLVPSIEQIRLVSSGTEAT 120 GPAIVGHAHP+VVKAVQ AA RGLSFGAPTEAEIEMAE I +LVPSIEQ+RLVSSGTEA Sbjct: 61 GPAIVGHAHPDVVKAVQDAATRGLSFGAPTEAEIEMAELICRLVPSIEQVRLVSSGTEAA 120 Query: 121 MSALRLARGATGRDKIIKFEGCYHGHADSLLVKAGSGLLTFGNPTSAGVPEDFAKHTLVL 180 MSALRLARGATGRDKIIKFEGCYHGHADSLLVKAGSGLLTFGNPTSAGVPEDFAKHTLVL Sbjct: 121 MSALRLARGATGRDKIIKFEGCYHGHADSLLVKAGSGLLTFGNPTSAGVPEDFAKHTLVL 180 Query: 181 DYNNAQQLEDAFKTAGHEIACVIVEPVAGNMNLVRASDEFLRTMRRLCTEYGAILIFDEV 240 DYN+ QLE+ FK G IACVIVEPVAGNMNL+ A+ EFL+TMRR+CT+YGA++I DEV Sbjct: 181 DYNDPAQLENVFKEMGDSIACVIVEPVAGNMNLLPATPEFLQTMRRVCTQYGAVMILDEV 240 Query: 241 MSGFRVARGGAQELNGIVPDLTALGKVIGGGLPVAAFGGRAEVMKHLAPLGGVYQAGTLS 300 MSGFRVA GGAQ L GI PDLT LGKVIGGGLPVAAFGGRA++M+HLAPLGGVYQAGTLS Sbjct: 241 MSGFRVALGGAQSLYGITPDLTVLGKVIGGGLPVAAFGGRADIMRHLAPLGGVYQAGTLS 300 Query: 301 GNPVTVAAGMATLKIIQQPEFYANLTAQTRKLADGLTAAAKAAGVTFTADAIGGMFGLYF 360 GNPVTVAAGMATLK+IQ P FY NLTAQT KL G +AAA+ A + F A+++GGMFGLYF Sbjct: 301 GNPVTVAAGMATLKLIQAPGFYENLTAQTTKLVHGFSAAAREADIAFCANSVGGMFGLYF 360 Query: 361 DAKVPTSYAEVMQGDKERFNRFFHKMLDASVYFAPSAFEAGFVSAQHSDAIIEETI 416 ++VP SY +M+ DK RFN FFH MLDA VY APSAFEAGFVSAQH DA+I+ +I Sbjct: 361 ASEVPVSYDTMMKCDKTRFNAFFHAMLDAGVYLAPSAFEAGFVSAQHDDAVIDSSI 416 >gi|152980209|ref|YP_001352373.1| acetylornithine transaminase protein [Janthinobacterium sp. Marseille] Length = 400 Score = 125 bits (315), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 98/338 (28%), Positives = 158/338 (46%), Gaps = 32/338 (9%) Query: 23 PVRAFRSVGGTPRFI-ERAEGPWFWDAEGKRYIDYIGSWGPAIVGHAHPEVVKAVQQAAA 81 PV + + P + +G W D +GKRY+DY+ W +GH+ P+ ++ A Sbjct: 7 PVNSLLYITNRPELVFTEGDGMWLTDHKGKRYLDYLQGWAVNCLGHS-PQCIQDALNVQA 65 Query: 82 RGLSFGAP---TEAEIEMAEEIIKLVPSIEQIRLVSSGTEATMSALRLAR---------G 129 + L +P E I +A ++ +++ +SG EA SA++LAR Sbjct: 66 KKLINPSPAFYNEPSIALAA-LLTGNSCFDRVFFANSGAEANESAVKLARKWGKLNKNAA 124 Query: 130 ATGRDKIIKFEGCYHGHADSLLVKAG-SGLLTFGNPTSAGVPEDFAKHTLVLDYNNAQQL 188 R +II F+ +HG + + +G +G T P G F K TL + Sbjct: 125 GENRYEIITFDHSFHGRTLATMSASGKAGWDTIYAPQVPG----FFKATL-------NDI 173 Query: 189 EDAFKTAGHEIACVIVEPVAGNMNLVRASDEFLRTMRRLCTEYGAILIFDEVMSGF-RVA 247 + K + V++EPV G ++ A+ EF++ +R L E+G +LI DEV +G R Sbjct: 174 DSVKKLITDKTIAVMLEPVQGEGGVIPATREFMQALRALTKEHGVLLIVDEVQTGMGRTG 233 Query: 248 RGGAQELNGIVPDLTALGKVIGGGLPVAAFGGRAEVMKHLAPLGGVYQAGTLSGNPVTVA 307 +L+GI PD+ LGK IGGG+P+AA R E+ A Q GT +GNP+ A Sbjct: 234 ELFGYQLSGITPDIMTLGKGIGGGVPLAAMLCREEI----ACFEPGDQGGTYNGNPLMTA 289 Query: 308 AGMATLKIIQQPEFYANLTAQTRKLADGLTAAAKAAGV 345 G A + + P F ++ + L+ L + G+ Sbjct: 290 VGNAVAQALLAPGFLQSVKDKGAYLSAALLKLTEKHGL 327 >gi|152980626|ref|YP_001351837.1| ornithine aminotransferase [Janthinobacterium sp. Marseille] Length = 413 Score = 110 bits (274), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 105/373 (28%), Positives = 168/373 (45%), Gaps = 28/373 (7%) Query: 34 PRFIERAEGPWFWDAEGKRYIDYIGSWGPAIVGHAHPEVVKAV-QQAAARGLSFGAPTEA 92 P + + G W WD +GKRY+D + ++ GH+HP++V+A+ QQA ++ A Sbjct: 26 PVVLSKGRGIWLWDEDGKRYMDMMSAYSAVSFGHSHPQLVQALTQQAGQLAVTSRAFYTD 85 Query: 93 EIEMAEEIIKLVPSIEQIRLVSSGTEATMSALRLARGATGRDKIIKFEGCYHGHADSLLV 152 ++ +++ + +++ ++SGTEA ++L+ AR K +G A ++ Sbjct: 86 QLGRFLQLLCEMTGMDKALPMNSGTEAVETSLKAARKWA-----YKVKGVPDQQAQIIVC 140 Query: 153 K---AGSGLLTFGNPTSAGVPEDFAKHT---LVLDYNNAQQLEDAFKTAGHEIACVIVEP 206 AG G + A E F + + Y +A LE A A +VEP Sbjct: 141 AGNFAGRSTTIVGFSSEAQYREGFGPFDGGFVTIPYGDAAALEAAITP---HTAAFLVEP 197 Query: 207 VAGNMNLVRASDEFLRTMRRLCTEYGAILIFDEVMSGF-RVARGGAQELNGIVPD-LTAL 264 + G ++ D +L R +CT +LI DEV +G R R A + GI PD L Sbjct: 198 IQGEGGIIVPPDAYLAQCREICTRRNILLICDEVQTGLGRTGRLLACDHEGIRPDGLILG 257 Query: 265 GKVIGGGLPVAAFGGRAEVMKHLAPLGGVYQAGTLSGNPVTVAAGMATLKIIQQPEFYAN 324 + GG LPV+AF R+EVM P T GNP+ A G A L +++ E A Sbjct: 258 KALGGGLLPVSAFLARSEVMDVFTPGD---HGSTFGGNPLAAAVGYAALSLLRDGELIAA 314 Query: 325 LTAQTRKLADGLTAAAKAAGVTFTADAIGGMFGLYFDAKVPT--SYAEVMQGDKERFNRF 382 + ++L +GL A A + G + GL + +V T S+ E + + Sbjct: 315 AEQRGQRLREGLNALRHPA--IRSVRGKGLLIGLELEPQVITARSFCERLMENGVLSKET 372 Query: 383 FHKMLDASVYFAP 395 H + V FAP Sbjct: 373 HHTV----VRFAP 381 >gi|152979966|ref|YP_001354181.1| beta alanine--pyruvate transaminase [Janthinobacterium sp. Marseille] Length = 439 Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 92/364 (25%), Positives = 156/364 (42%), Gaps = 46/364 (12%) Query: 23 PVRAFRSVGGTPRFIERAEGPWFWDAEGKRYIDYIGSWGPAIVGHAHPEVVKAVQQAAAR 82 P A R PR + A G ++ +G++ +D GH HP++ +A+Q+ AA Sbjct: 13 PFTANRQFKAKPRMLVAASGMYYTSDDGRQILDGTAGLWCVNAGHGHPKITEAIQKQAAS 72 Query: 83 G-----LSFGAPTEAEIEMAEEIIKLVPS-IEQIRLVSSGTEATMSALRLA------RGA 130 G P E A + ++ P+ + ++ + G+E +AL++A RG Sbjct: 73 MDYAPLFQIGHPLA--FEAATALAEIAPAGLNRVFFCNDGSEGVDTALKIALAYHRIRGD 130 Query: 131 TGRDKIIKFEGCYHG--HADSLLVKAGSGLLTFGNPTSAGVPEDFAKHTLVLDYN----- 183 GR ++I E YHG + FG G+ D +H L + N Sbjct: 131 AGRTRLIGRERAYHGVGFGGIAVGGIAGNRKQFG----PGLAADHLRHPLDIAKNAYSRG 186 Query: 184 -------NAQQLEDAFKTAGHE---IACVIVEPVAGNMNLVRASDEFLRTMRRLCTEYGA 233 A +LE A H+ +A VIVEP+ G+ ++ +L +R +C ++G Sbjct: 187 LPLHGAEMADELEQRL-LALHDPSTVAAVIVEPLQGSTGVILPPKGYLEKLRVICDKHGV 245 Query: 234 ILIFDEVMSGF-RVARGGAQELNGIVPDLTALGKVI-GGGLPVAAFGGRA---EVMKHLA 288 +LIFDEV++GF R+ + G+ PD+ K + +P+ A E +A Sbjct: 246 LLIFDEVITGFGRLGTAFGADFFGVKPDMIVCAKALTNAAVPMGAVIVHEKIHETFMQMA 305 Query: 289 PLGGV--YQAGTLSGNPVTVAAGMATLKIIQQPEFYANLTAQTRKLADGLTAAAKAAGVT 346 P + + T SG+P+ AA +ATL + ++ + + D AA G+ Sbjct: 306 PADSIELFHGYTYSGHPLAAAAAIATLDVYREEQLFQRAAGMAPYFED---AAHSLKGLP 362 Query: 347 FTAD 350 F D Sbjct: 363 FVKD 366 >gi|152980665|ref|YP_001351810.1| adenosylmethionine--8-amino-7-oxononanoate transaminase [Janthinobacterium sp. Marseille] Length = 450 Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 78/317 (24%), Positives = 131/317 (41%), Gaps = 40/317 (12%) Query: 37 IERAEGPWFWDAEGKRYIDYIGSWGPAIVGHAHPEVVKAVQ---QAAARGLSFGAPTEAE 93 + G W +D +G+RY+D I SW + GHA+P + A++ + G E Sbjct: 39 VSHGRGAWLYDTDGQRYLDAISSWWVNMFGHANPRINSALRSQLDMLEHAMLAGFTHEPV 98 Query: 94 IEMAEEI-IKLVPSIEQIRLVSSGTEATMSALRLA------RGATGRDKIIKFEGCYHGH 146 ++++E++ + + S G A AL+++ G + + + + +G YHG Sbjct: 99 VQLSEQLAARTNHELGHCFYASDGASAVEIALKMSFHSWRNNGLSDKREFVCLKGSYHGE 158 Query: 147 A----------------DSLLVKAGSGLLTFGNPTSAG-VPEDFAKHTLVLDYNNAQQLE 189 D++L A + G D A+ A LE Sbjct: 159 TIGALAVTDVPIFRDAYDAMLQHAHVVMSPDARAARDGETAADVARRA-------ASALE 211 Query: 190 DAFKTAGHEIACVIVEPVAGNMNLVRASDE-FLRTMRRLCTEYGAILIFDEVMSGF-RVA 247 + IA +IVEP+ + D +L+ +R LC +Y LI DE+ G R Sbjct: 212 TLLQERSKHIAALIVEPLVQCATGMAMYDPVYLQEVRALCDKYQVHLIADEIAVGCGRTG 271 Query: 248 RGGAQELNGIVPDLTALGKVIGGG-LPVAAFGGRAEVMK---HLAPLGGVYQAGTLSGNP 303 A E + PD L K I GG LP++ R E+ + H G + + +GNP Sbjct: 272 TFFACEQAAVWPDFLCLSKGISGGYLPLSLVMTRDEIYQSFYHGDVTRGFLHSHSYTGNP 331 Query: 304 VTVAAGMATLKIIQQPE 320 + A +ATL I ++ + Sbjct: 332 LACRAALATLAIFEEDD 348 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 931,641 Number of extensions: 38668 Number of successful extensions: 160 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 147 Number of HSP's successfully gapped: 6 Length of query: 427 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 341 Effective length of database: 903,079 Effective search space: 307949939 Effective search space used: 307949939 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)